Schema for xenoRefFlat
  Database: criGri1    Primary Table: xenoRefFlat    Row Count: 552,644   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName Maxvarchar(255) Name of gene as it appears in genome browser.
name NM_001146176varchar(255) Name of gene
chrom KE380958varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 25582int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 27185int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 25582int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 25900int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 10int(10) unsigned Number of exons
exonStarts 25582,25751,25803,25855,259...longblob Exon start positions (or end positions for minus strand item)
exonEnds 25750,25799,25855,25927,262...longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        criGri1.xenoMrna.qName (via xenoRefFlat.name)
      criGri1.xenoRefGene.name (via xenoRefFlat.name)
      criGri1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
MaxNM_001146176KE380958+255822718525582259001025582,25751,25803,25855,25965,26275,26498,26602,26892,27068,25750,25799,25855,25927,26264,26471,26588,26882,27041,27185,
ZNF414NM_001146175KE380595-1573521594481573521594488157352,157920,158049,158185,158811,159012,159348,159408,157501,157971,158182,158384,158906,159129,159408,159448,
cln8NM_001114588KE381443-4698624718364698624718363469862,470000,471383,469976,470114,471836,
EIF3G1NM_001161135KE379943+6254716255856254716255851625471,625585,
Cdc26NM_001368241KE382282+223676524612472461247246124732236765,2236904,2461208,2236857,2236939,2461247,
Cdc26NM_001368241KE382765+3078165351125351125351124307816,311093,528996,535082,307830,311117,529044,535112,
Cdc26NM_001368241KE382941-206971827649452764945276494532069718,2447365,2764903,2069754,2447442,2764945,
LOC102724770NM_001368242KE378514-129619813011531296198130115341296198,1296852,1297557,1300989,1296291,1296993,1297658,1301153,
SDO1NM_001181909KE382458-41063411654106341165141063,41165,
FCHO1NR_169221KE379597-1039601768821768821768824103960,115855,168794,176783,104089,115954,168938,176882,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.