Schema for all_mrna
  Database: criGriChoV1    Primary Table: all_mrna    Row Count: 70,110   Data last updated: 2018-10-31
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 590smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 684int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 2int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 936int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName JI870364varchar(255) values Query sequence name
qSize 687int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 687int(10) unsigned range Alignment end position in query
tName NW_003613580v1varchar(255) values Target sequence name
tSize 8779783int(10) unsigned range Target sequence size
tStart 736931int(10) unsigned range Alignment start position in target
tEnd 738552int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 175,372,37,22,79,longblob   Size of each block
qStarts 0,175,547,585,608,longblob   Start of each block in query.
tStarts 736931,738041,738414,738451...longblob   Start of each block in target.

Connected Tables and Joining Fields
        criGriChoV1.all_est.qName (via all_mrna.qName)
      criGriChoV1.mrnaOrientInfo.name (via all_mrna.qName)
      criGriChoV1.refGene.name (via all_mrna.qName)
      criGriChoV1.refSeqAli.qName (via all_mrna.qName)
      criGriChoV1.xenoRefGene.name (via all_mrna.qName)
      criGriChoV1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
590684001222936+JI8703646870687NW_003613580v187797837369317385525175,372,37,22,79,0,175,547,585,608,736931,738041,738414,738451,738473,
590684001222936+JP0523026870687NW_003613580v187797837369317385525175,372,37,22,79,0,175,547,585,608,736931,738041,738414,738451,738473,
5905840000000+JI8740755840584NW_003613580v187797837393077398911584,0,739307,
5905560000000+JP0617335560556NW_003613580v187797837393357398911556,0,739335,
745420001100-JI8908915430543NW_003613580v18779783183457018351122365,177,0,366,1834570,1834935,
745420001100-JP0400895430543NW_003613580v18779783183457018351122365,177,0,366,1834570,1834935,
5995060001100-JI8731735070507NW_003613580v187797831835350183585624,502,0,5,1835350,1835354,
5995060000000-JP0477695060506NW_003613580v18779783183535018358561506,0,1835350,
599343200452387-JI8697653500350NW_003613580v1877978318552131855945711,7,8,6,89,125,99,0,13,21,30,37,126,251,1855213,1855224,1855231,1855239,1855245,1855720,1855846,
599343200342387-JP0590563490349NW_003613580v1877978318552131855945610,16,6,89,125,99,0,12,29,36,125,250,1855213,1855223,1855239,1855245,1855720,1855846,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.