Schema for estOrientInfo
  Database: danRer4    Primary Table: estOrientInfo    Row Count: 2,094,638   Data last updated: 2017-11-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 589smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 538295int(10) unsigned Start position in chromosome
chromEnd 539502int(10) unsigned End position in chromosome
name AA566413varchar(255) Accession of EST
intronOrientation 1smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer4.all_est.qName (via estOrientInfo.name)
      danRer4.est.qName (via estOrientInfo.name)
      danRer4.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
589chr1538295539502AA56641310000
589chr1617251619743AA658727-200019
593chr110593841061801AA605922-2119045
593chr111288441129000AA56677200000
593chr111399701141995AA49461910000
594chr113016851302122AA495435-10000
595chr113163851321673AA49512810000
596chr114514221457580AA658718-10008
596chr115307441530944AA49491300000
599chr118418201847705AA606126-400024

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.