Schema for xenoRefFlat
  Database: danRer6    Primary Table: xenoRefFlat    Row Count: 319,946   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ZNF266varchar(255) values Name of gene as it appears in genome browser.
name NM_001271314varchar(255) values Name of gene
chrom chr4varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 45445187int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 46521133int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 45674871int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 46521133int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 8int(10) unsigned range Number of exons
exonStarts 45445187,45610021,45674871,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 45445232,45610093,45674922,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        danRer6.xenoMrna.qName (via xenoRefFlat.name)
      danRer6.xenoRefGene.name (via xenoRefFlat.name)
      danRer6.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ZNF266NM_001271314chr4-45445187465211334567487146521133845445187,45610021,45674871,45674954,45863466,45992148,46385990,46521040,45445232,45610093,45674922,45674986,45863512,45992433,46386506,46521133,
ZNF266NM_001271314chr4-503265535203399551098687520339951150326553,50326696,50427888,50696754,51098687,51098990,51099143,51542862,51940444,51940650,52033902,50326574,50326768,50427933,50696770,51098741,51099059,51099501,51543064,51940566,51940862,52033995,
acat1.LNM_001091210chr10-37045109370456253704510937045625337045109,37045330,37045547,37045230,37045476,37045625,
SLC35C1NM_001101210chr7-73746751737500627374675173750062473746751,73747039,73749623,73749957,73747000,73747257,73749951,73750062,
snx18NM_001011173chr5-39257767392764513925776739276451539257767,39275001,39275374,39276214,39276271,39258021,39275272,39275959,39276241,39276451,
Fkbp12NM_001046917chr23-16109121161095081610912116109508216109121,16109400,16109250,16109508,
lev-11NM_001313525Zv8_scaffold2578-3622103645233622103645234362210,362650,362832,364385,362279,362713,362892,364523,
Slc25a37NM_001013996chr8+51356831513836565135683151383656451356831,51377611,51381019,51383233,51356942,51377838,51381077,51383656,
sumo2NM_001016406chr3+454395645599244543956455992434543956,4553732,4559869,4544090,4553804,4559924,
melkNM_001016390Zv8_NA4694-1587561587563158,390,666,302,507,756,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.