Schema for bdgpGene
  Database: dm1    Primary Table: bdgpGene    Row Count: 18,746   Data last updated: 2005-01-07
Format description: GenePred table with proteinID field for WormBase Genes.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name CG11023-RAvarchar(255) values Name of gene
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 7528int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 9491int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 7679int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 9273int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 7528,8228,8667,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 8116,8589,9491,longblob   Exon end positions (or start positions for minus strand item)
proteinID Q86BM6varchar(255) values Swiss-Prot protein ID

Connected Tables and Joining Fields
        dm1.arbExpDistance.query (via bdgpGene.name)
      dm1.arbExpDistance.target (via bdgpGene.name)
      dm1.bdgpBlastTab.query (via bdgpGene.name)
      dm1.bdgpBlastTab.target (via bdgpGene.name)
      dm1.bdgpCanonical.transcript (via bdgpGene.name)
      dm1.bdgpGenePep.name (via bdgpGene.name)
      dm1.bdgpIsoforms.transcript (via bdgpGene.name)
      dm1.bdgpSwissProt.bdgpName (via bdgpGene.name)
      dm1.bdgpToCanonical.name (via bdgpGene.name)
      dm1.bdgpToLocusLink.name (via bdgpGene.name)
      dm1.bdgpToPfam.name (via bdgpGene.name)
      dm1.bdgpToRefSeq.name (via bdgpGene.name)
      dm1.blastFBPep00.name (via bdgpGene.name)
      dm1.drBlastTab.query (via bdgpGene.name)
      dm1.fbTranscript.transcriptId (via bdgpGene.name)
      dm1.hgBlastTab.query (via bdgpGene.name)
      dm1.pscreen.geneIds (via bdgpGene.name)
      dm1.scBlastTab.query (via bdgpGene.name)
      dm1.bdgpCanonical.protein (via bdgpGene.proteinID)
      dm1.bdgpSwissProt.swissProtId (via bdgpGene.proteinID)
      dm1.flyBaseSwissProt.swissProtId (via bdgpGene.proteinID)
      go.goaPart.dbObjectId (via bdgpGene.proteinID)
      knownGeneV39.kgProtAlias.alias (via bdgpGene.proteinID)
      knownGeneV39.kgSpAlias.spID (via bdgpGene.proteinID)
      knownGeneV39.kgXref.spID (via bdgpGene.proteinID)
      proteome.spOldNew.acc (via bdgpGene.proteinID)
      proteome.spReactomeEvent.spID (via bdgpGene.proteinID)
      proteome.spReactomeId.spID (via bdgpGene.proteinID)
      uniProt.accToKeyword.acc (via bdgpGene.proteinID)
      uniProt.accToTaxon.acc (via bdgpGene.proteinID)
      uniProt.citation.acc (via bdgpGene.proteinID)
      uniProt.comment.acc (via bdgpGene.proteinID)
      uniProt.description.acc (via bdgpGene.proteinID)
      uniProt.displayId.acc (via bdgpGene.proteinID)
      uniProt.extDbRef.acc (via bdgpGene.proteinID)
      uniProt.feature.acc (via bdgpGene.proteinID)
      uniProt.gene.acc (via bdgpGene.proteinID)
      uniProt.geneLogic.acc (via bdgpGene.proteinID)
      uniProt.info.acc (via bdgpGene.proteinID)
      uniProt.otherAcc.acc (via bdgpGene.proteinID)
      uniProt.protein.acc (via bdgpGene.proteinID)
      visiGene.gene.uniProt (via bdgpGene.proteinID)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsproteinID
CG11023-RAchr2L+752894917679927337528,8228,8667,8116,8589,9491,Q86BM6
CG2671-RFchr2L-9835213721121715648109835,11409,11778,12285,13519,13682,14932,19879,21065,21348,11344,11518,12221,12928,13625,14874,15711,20020,21200,21372,Q8IPV5
CG2671-REchr2L-983521372112171564899835,11409,11778,12285,13519,13682,14932,19879,21065,11344,11518,12221,12928,13625,14874,15711,20015,21372,Q8IPV5
CG2671-RDchr2L-983521372112171564899835,11409,11778,12285,13519,13682,14932,19879,21065,11344,11518,12221,12928,13625,14874,15711,20020,21372,Q8IPV5
CG2671-RCchr2L-983518583112171713699835,11409,11778,12285,13519,13682,14932,17052,18260,11344,11518,12221,12928,13625,14874,15711,17212,18583,Q8IPV5
CG2671-RBchr2L-983521372112171994499835,11409,11778,12285,13519,13682,14932,19884,21135,11344,11518,12221,12928,13625,14874,15711,20020,21372,Q8IPV5
CG2671-RAchr2L-9835185831121717136109835,11409,11778,12285,13519,13682,14932,17052,18025,18260,11344,11518,12221,12928,13625,14874,15711,17212,18168,18583,Q8IPV5
CG2657-RAchr2L-21918238882192123888221918,22983,22687,23888,Q9VPI2
CG31973-RBchr2L-254014014126523401411425401,26765,27052,28014,28732,28981,30393,33844,34557,34719,35745,38534,39300,40119,26688,26964,27490,28240,28926,29068,33270,34288,34604,35212,38298,38731,39857,40141,Q9VPI3
CG31973-RAchr2L-254015924226523581501325401,26765,27052,28014,28732,28981,33844,34557,34719,38534,39300,58080,59189,26688,26964,27490,28240,28926,29068,34288,34604,35212,38731,39857,58182,59242,Q9VPI3

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.