Schema for mrnaOrientInfo
  Database: dm1    Primary Table: mrnaOrientInfo    Row Count: 128,116   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 7483int(10) unsigned range Start position in chromosome
chromEnd 9441int(10) unsigned range End position in chromosome
name JV218353varchar(255) values Accession of EST
intronOrientation -1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dm1.all_mrna.qName (via mrnaOrientInfo.name)
      dm1.bdgpToRefSeq.value (via mrnaOrientInfo.name)
      dm1.refFlat.name (via mrnaOrientInfo.name)
      dm1.refGene.name (via mrnaOrientInfo.name)
      dm1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr2L74839441JV218353-10100
585chr2L74839441JV218355-10100
585chr2L75279484BT0820871252430
585chr2L75289484BT0238721260440
585chr2L983821282BT1002289160400
585chr2L984118562X054268200410
585chr2L1057521372BT100129815000
585chr2L1064118552JV21333380000
585chr2L1070218560AY0516548190430
585chr2L1121417136FJ63467970000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.