Schema for mrnaOrientInfo
  Database: dp2    Primary Table: mrnaOrientInfo    Row Count: 254   Data last updated: 2017-10-16
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 595smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig1006_Contig943varchar(255) values Reference sequence chromosome or scaffold
chromStart 1383707int(10) unsigned range Start position in chromosome
chromEnd 1383806int(10) unsigned range End position in chromosome
name DL243143varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dp2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
595Contig1006_Contig94313837071383806DL24314301000
586Contig1045_Contig3832138552139100EU37907603000
591Contig1045_Contig3832809720811329JX175245200220
587Contig1277_Contig4006387345388374AF02579820000
586Contig1366_Contig5637201278204158AJ86672220000
585Contig1667_Contig19099221693524AF02580510000
586Contig1714_Contig4288152901152992FW36113501000
591Contig1714_Contig4288789139790994AJ82184930000
585Contig2011_Contig69834876305GU93742342000
585Contig2012_Contig160543518297GU93742342000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.