Schema for xenoRefFlat
  Database: droAna1    Primary Table: xenoRefFlat    Row Count: 284,592   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Foxl1varchar(255) values Name of gene as it appears in genome browser.
name NM_001168072varchar(255) values Name of gene
chrom 2448896varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 6149694int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 6149796int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 6149694int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 6149796int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 6149694,6149736,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 6149721,6149796,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droAna1.xenoMrna.qName (via xenoRefFlat.name)
      droAna1.xenoRefGene.name (via xenoRefFlat.name)
      droAna1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Foxl1NM_0011680722448896-614969461497966149694614979626149694,6149736,6149721,6149796,
CG33489NM_0012747862448885-573870357388295738703573882915738703,5738829,
CG7394NM_0012747852448885+573334457337955733344573375925733344,5733645,5733584,5733795,
CG10916NM_1374592448887+3914533921733914533921731391453,392173,
Dgp-1NM_1374582448887-38434438698438451238668110384344,384459,384512,384536,384671,385791,386190,386428,386719,386904,384380,384495,384525,384671,385727,386133,386372,386681,386740,386984,
FTSH8NM_0013316282448902-206083220616382060832206163862060832,2060888,2061069,2061106,2061158,2061299,2060847,2060952,2061099,2061109,2061263,2061638,
MEE5NM_0013316212448857+345253934553113452539345531163452539,3452674,3453017,3453993,3454074,3454978,3452638,3452957,3453076,3454053,3454920,3455311,
lncRNA:CR46003NR_1332062448896-16689561688049168804916880491361668956,1669087,1669215,1669347,1669408,1669531,1669829,1669990,1670020,1670035,1670084,1670592,1670697,1670841,1670988,1671072, ...1669031,1669163,1669300,1669388,1669498,1669598,1669967,1670010,1670026,1670052,1670194,1670685,1670738,1670961,1671004,1671170, ...
MCM3NM_0013663732448902-263774726398042637747263931862637747,2638249,2638481,2639057,2639606,2639753,2637963,2638420,2638976,2639579,2639714,2639804,
LOC100506688NR_1046152448902-130052919610821961082196108251300529,1596687,1958757,1960202,1961049,1300553,1596711,1958781,1960207,1961082,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.