Schema for xenoRefFlat
  Database: droAna2    Primary Table: xenoRefFlat    Row Count: 265,089   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName RpS26varchar(255) values Name of gene as it appears in genome browser.
name NM_001044055varchar(255) values Name of gene
chrom scaffold_12916varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 2355119int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 2355443int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 2355119int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 2355443int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 2355119,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 2355443,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droAna2.xenoMrna.qName (via xenoRefFlat.name)
      droAna2.xenoRefGene.name (via xenoRefFlat.name)
      droAna2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
RpS26NM_001044055scaffold_12916-235511923554432355119235544312355119,2355443,
MynnNM_001012178scaffold_12943-466817846685864668178466858624668178,4668508,4668250,4668586,
DAPK2NM_001384998scaffold_13266+11893393118938921189339311893892311893393,11893543,11893862,11893456,11893642,11893892,
pgp-4NM_001270214scaffold_13266+14492484144948281449248414494828314492484,14494387,14494648,14492826,14494594,14494828,
His1:CG33858NM_001032203scaffold_12943-2180642238772180702188204218064,218384,218436,223792,218370,218429,218823,223877,
snRNA:U5:35DNR_001659scaffold_12916+899585989959438995943899594318995859,8995943,
gdf7.SNM_001085740scaffold_13266+4203564204884203564204881420356,420488,
CG17029NM_001274979scaffold_13337-11185985111871181118598911187115211185985,11186635,11186364,11187118,
CG17027NM_001274980scaffold_13337-11183323111842611118333111184255211183323,11183671,11183614,11184261,
sliNM_001274088scaffold_13266+119194821195525311939247119538884311919482,11938686,11938753,11938813,11938839,11938931,11939130,11939376,11942502,11942639,11943011,11943179,11943579,11944669,11 ...11919535,11938709,11938795,11938824,11938850,11938967,11939328,11939552,11942574,11942711,11943083,11943324,11943816,11944810,11 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.