Schema for xenoRefFlat
  Database: droGri1    Primary Table: xenoRefFlat    Row Count: 289,713   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Slc12a9varchar(255) values Name of gene as it appears in genome browser.
name NM_031406varchar(255) values Name of gene
chrom scaffold_24906varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 152669int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 153641int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 152669int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 153641int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 152669,153482,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 152840,153641,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droGri1.xenoMrna.qName (via xenoRefFlat.name)
      droGri1.xenoRefGene.name (via xenoRefFlat.name)
      droGri1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Slc12a9NM_031406scaffold_24906-1526691536411526691536412152669,153482,152840,153641,
Bicc1NM_031397scaffold_24151+4116944152064116944152063411694,411987,415107,411763,412278,415206,
HUWE1NM_031407scaffold_24821+69640071613069640071613021696400,696624,698154,698256,698976,699072,699363,699936,700698,700938,701166,709561,710263,710404,714001,714510,714887,715169,71 ...696457,696804,698168,698370,699039,699324,699567,700182,700788,700989,701256,709576,710329,710488,714142,714816,715067,715494,71 ...
paraNM_001201672scaffold_25051+49650955555149679055550931496509,496749,504768,505081,509523,512383,512714,513063,514619,518838,521212,521498,521765,521967,525021,525380,525908,528780,52 ...496604,496940,504924,505287,509652,512475,512992,513372,514928,518901,521393,521710,521865,522036,525299,525554,526071,528971,52 ...
B0491.7NM_064026scaffold_24785-45716150226149370150226445716,149370,149529,150115,45755,149412,149928,150226,
chrngNM_001254950scaffold_10501-615663246156632416156,6324,
GclcNM_001303306scaffold_25041-321164732137253211647321372263211647,3212197,3212503,3213107,3213326,3213539,3211827,3212476,3212947,3213170,3213449,3213725,
best-9NM_001383107scaffold_25013+10784398107846291078439810784629210784398,10784527,10784470,10784629,
ACO1NM_001082315scaffold_25013-10832155108358701083215510835870710832155,10832367,10833093,10835008,10835395,10835552,10835834,10832224,10832985,10833669,10835362,10835491,10835768,10835870,
Cdk5r2NM_001109309scaffold_24946-130624413063611306244130636111306244,1306361,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.