Schema for all_mrna
  Database: droMoj1    Primary Table: all_mrna    Row Count: 51   Data last updated: 2017-10-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1471int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 2int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 129int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName EU514471varchar(255) values Query sequence name
qSize 13530int(10) unsigned range Query sequence size
qStart 1270int(10) unsigned range Alignment start position in query
qEnd 2745int(10) unsigned range Alignment end position in query
tName contig_12357varchar(255) values Target sequence name
tSize 1887int(10) unsigned range Target sequence size
tStart 283int(10) unsigned range Alignment start position in target
tEnd 1885int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 407,169,31,859,7,longblob   Size of each block
qStarts 10785,11192,11361,11393,12253,longblob   Start of each block in query.
tStarts 283,746,988,1019,1878,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droMoj1.mrnaOrientInfo.name (via all_mrna.qName)
      droMoj1.xenoMrna.qName (via all_mrna.qName)
      droMoj1.xenoRefGene.name (via all_mrna.qName)
      droMoj1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851471200222129-EU5144711353012702745contig_12357188728318855407,169,31,859,7,10785,11192,11361,11393,12253,283,746,988,1019,1878,
5853002000000+JF5124843020302contig_129329147102913311302,0,1029,
5851600200223114-EU5144711353080359639contig_13310171601716677,42,608,380,185,310,3891,3969,4012,4620,5000,5185,0,77,119,779,1160,1406,
58539040000910+JF5124813950394contig_134766154541494510165,6,6,9,9,19,3,42,103,32,0,165,171,177,186,195,214,217,259,362,4541,4707,4714,4721,4732,4742,4762,4766,4809,4913,
5858230000000+EU4174441374023583181contig_13667166559314161823,2358,593,
5852230000000+EU4174427110223contig_136671665119314161223,0,1193,
58510600001100+EU5954031342139655026contig_141201611551161121050,10,3965,5016,551,1601,
58583200000254+EU5954031342131343966contig_1428515943821268363,324,445,3134,3197,3521,382,446,823,
5851300000000-EU5144711353034733603contig_15324150592010501130,9927,920,
58526300000187+KC59813311188541117contig_156371483103113812234,29,854,1088,1031,1352,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.