Schema for xenoRefFlat
  Database: droMoj1    Primary Table: xenoRefFlat    Row Count: 336,922   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ANKLE1varchar(255) values Name of gene as it appears in genome browser.
name NM_152363varchar(255) values Name of gene
chrom contig_2027varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 42587int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 42953int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 42587int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 42953int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 42587,42902,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 42740,42953,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droMoj1.xenoMrna.qName (via xenoRefFlat.name)
      droMoj1.xenoRefGene.name (via xenoRefFlat.name)
      droMoj1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ANKLE1NM_152363contig_2027-42587429534258742953242587,42902,42740,42953,
ANKLE1NM_152363contig_817-39658430244300943024339658,41637,43009,39686,41676,43024,
GILT3NM_142908contig_1375+40405411014040541101440405,40616,40869,41005,40541,40773,40917,41101,
pdk4.LNM_001086628contig_109-574468675744686765744,5888,6044,6403,6508,6729,5864,6023,6134,6466,6571,6867,
PHKBNM_001163825contig_3086-51725523365172552336351725,51974,52147,51806,52079,52336,
CBSLNM_001321073contig_2808+62063629396206362939462063,62393,62756,62849,62354,62726,62804,62939,
DLG4NM_001321074contig_3390+869894008698940038698,8920,9313,8834,9189,9400,
COX15NM_001320974contig_6615-236732022367320252367,2688,2772,2871,3139,2595,2751,2844,2985,3202,
DLG4NM_001321074contig_3389+3629913629912362,769,578,991,
DLG4NM_001321076contig_3389+3629913629912362,769,578,991,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.