Schema for xenoRefFlat
  Database: droMoj2    Primary Table: xenoRefFlat    Row Count: 263,825   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName psma7.Svarchar(255) values Name of gene as it appears in genome browser.
name NM_001090305varchar(255) values Name of gene
chrom scaffold_6308varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 3211043int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3211695int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 3211043int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 3211695int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 3211043,3211197,3211495,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3211133,3211429,3211695,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droMoj2.xenoMrna.qName (via xenoRefFlat.name)
      droMoj2.xenoRefGene.name (via xenoRefFlat.name)
      droMoj2.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
psma7.SNM_001090305scaffold_6308+321104332116953211043321169533211043,3211197,3211495,3211133,3211429,3211695,
RbpNM_001275673scaffold_6540-105952011061972810595289106139524110595201,10595487,10595516,10595742,10595833,10596051,10599136,10602203,10602469,10602646,10603426,10603834,10603957,10606590,10 ...10595439,10595508,10595742,10595754,10595875,10596079,10599205,10602407,10602634,10602763,10603600,10603897,10603993,10606594,10 ...
SOX5NM_001261414scaffold_6680+933312094364929436492943649259333120,9364126,9365048,9435954,9436468,9333135,9364140,9365068,9435978,9436492,
Ten-aNM_001169258scaffold_6473+13443598136183601361836013618360513443598,13445414,13446675,13447185,13618339,13443615,13445429,13446691,13447201,13618360,
Ten-aNM_001169258scaffold_6496-714255176680077667978766800737142551,7326149,7667978,7142581,7326173,7668007,
AKT2NM_001330511scaffold_6680+959737295977029597372959770229597372,9597675,9597510,9597702,
CG43901NM_001103478scaffold_6540+15808738170108001580873816761330715808738,15835891,15836252,16246227,16642093,16761285,17010764,15808760,15835908,15836273,16246245,16642112,16761330,17010800,
KCNQNM_001273920scaffold_6496+7902727791433079027277913499197902727,7902915,7903671,7903952,7904217,7904415,7905325,7907261,7911282,7911413,7911566,7911791,7911949,7912228,7912381,7912760, ...7902778,7903067,7903889,7904128,7904343,7904526,7905372,7907455,7911353,7911494,7911615,7911886,7912171,7912321,7912485,7912876, ...
AprtNM_057289scaffold_6680-11328232113289551132823211328955411328232,11328494,11328507,11328871,11328448,11328497,11328741,11328955,
mpp6.SNM_001091314scaffold_6540-17209969172139351720996917213935317209969,17210401,17213857,17210050,17210479,17213935,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.