Schema for xenoRefFlat
  Database: droSec1    Primary Table: xenoRefFlat    Row Count: 261,826   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName rgvarchar(255) values Name of gene as it appears in genome browser.
name NM_167028varchar(255) values Name of gene
chrom super_5varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 3988903int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3989260int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 3988903int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 3989260int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 3988903,3989161,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3988945,3989260,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droSec1.xenoMrna.qName (via xenoRefFlat.name)
      droSec1.xenoRefGene.name (via xenoRefFlat.name)
      droSec1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
rgNM_167028super_5+398890339892603988903398926023988903,3989161,3988945,3989260,
ovoNM_167027super_23-3962516318139625163181339625,47343,163130,39649,47359,163181,
ovoNM_167027super_1+621379563334176213795633341776213795,6220599,6227852,6232504,6332386,6332556,6333357,6213817,6220615,6227866,6232518,6332416,6332580,6333417,
ovoNM_167027super_20+4440908491114440908491118444090,448164,449094,449967,449974,459343,460037,849081,444111,448179,449107,449974,449997,459364,460052,849111,
ovoNM_167027super_3-4244384251624244384251623424438,424700,425120,424468,424714,425162,
ovoNM_167027super_32+5186965195275186965195272518696,519482,518753,519527,
ovoNM_167027super_0+18197832183011451819783218301145518197832,18201281,18201392,18201435,18301115,18197856,18201294,18201435,18201454,18301145,
ovoNM_167027super_4-1782248178856517840791788565181782248,1782664,1783281,1783438,1783524,1784041,1784358,1784877,1785888,1786023,1786088,1786347,1786574,1787129,1787267,1788217, ...1782584,1783271,1783429,1783462,1783990,1784265,1784716,1785027,1785961,1786057,1786144,1786363,1787129,1787242,1788216,1788338, ...
ovoNM_167027super_5+541842057028215418420570282145418420,5421097,5701830,5702743,5418448,5421122,5701854,5702821,
ovoNM_167027super_9+2226165750212226165750215222616,222652,224172,225016,574997,222647,222657,224208,225041,575021,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.