Schema for xenoRefFlat
  Database: droYak1    Primary Table: xenoRefFlat    Row Count: 339,469   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Zfp27varchar(255) values Name of gene as it appears in genome browser.
name NM_001037707varchar(255) values Name of gene
chrom chr3Rvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 17666121int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 17666253int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 17666121int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 17666253int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 17666121,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 17666253,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droYak1.xenoMrna.qName (via xenoRefFlat.name)
      droYak1.xenoRefGene.name (via xenoRefFlat.name)
      droYak1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Zfp27NM_001037707chr3R+17666121176662531766612117666253117666121,17666253,
Zfp27NM_001037707chrX-13318731133363341331873113336334313318731,13322418,13336293,13318791,13322584,13336334,
Klc1NM_001081973chr3L-12948713129502281294871312950228512948713,12948986,12949529,12949751,12949950,12948860,12949463,12949652,12949832,12950228,
Klc1NM_001081972chr3L-12948713129502281294871312950228512948713,12948986,12949529,12949751,12949950,12948860,12949463,12949652,12949832,12950228,
RdxNM_001104616chrX+11790549117916211179054911791621611790549,11790705,11791038,11791104,11791159,11791450,11790618,11790990,11791099,11791106,11791303,11791621,
RdxNM_001104616chrX+12575375125781781257537512578178312575375,12576245,12578013,12575555,12577004,12578178,
ZNF783NR_144366chrX-802700780271458027145802714518027007,8027145,
ZNF783NR_144366chrX+19469223194693101946931019469310119469223,19469310,
LYSTNM_174020chr3L-196643419672381966434196723821966434,1967085,1966890,1967238,
LYSTNM_174020chr3L+487013148708914870131487089134870131,4870565,4870765,4870251,4870619,4870891,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.