Schema for xenoRefSeqAli
  Database: droYak2    Primary Table: xenoRefSeqAli    Row Count: 173,200   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3477int(10) unsigned range Number of bases that match that aren't repeats
misMatches 319int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 8int(10) unsigned range Number of inserts in query
qBaseInsert 672int(10) unsigned range Number of bases inserted in query
tNumInsert 13int(10) unsigned range Number of inserts in target
tBaseInsert 4216int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_164352varchar(255) values Query sequence name
qSize 5082int(10) unsigned range Query sequence size
qStart 39int(10) unsigned range Alignment start position in query
qEnd 4507int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 22324452int(10) unsigned range Target sequence size
tStart 7976int(10) unsigned range Alignment start position in target
tEnd 15988int(10) unsigned range Alignment end position in target
blockCount 15int(10) unsigned range Number of blocks in alignment
blockSizes 123,93,781,1192,106,643,443...longblob   Size of each block
qStarts 39,200,302,1083,2275,2381,3...longblob   Start of each block in query.
tStarts 22308464,22309729,22311565,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        droYak2.all_est.qName (via xenoRefSeqAli.qName)
      droYak2.all_mrna.qName (via xenoRefSeqAli.qName)
      droYak2.xenoMrna.qName (via xenoRefSeqAli.qName)
      droYak2.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droYak2.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5853477319008672134216+-NM_1643525082394507chr2L2232445279761598815123,93,781,1192,106,643,443,109,122,9,43,9,15,21,87,39,200,302,1083,2275,2381,3024,3467,3576,3889,3900,3948,3966,3989,4420,22308464,22309729,22311565,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22315929,22315975,22 ...
5853492311008927154367+-NM_0012588725315104740chr2L223244527976161461730,20,42,133,779,1192,106,643,443,109,122,9,43,9,15,21,87,10,40,188,404,537,1316,2508,2614,3257,3700,3809,4122,4133,4181,4199,4222,4653,22308306,22308337,22308465,22309719,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22 ...
5853492311008791154367+-NM_0012588735179104604chr2L223244527976161461730,20,42,133,779,1192,106,643,443,109,122,9,43,9,15,21,87,10,40,188,268,401,1180,2372,2478,3121,3564,3673,3986,3997,4045,4063,4086,4517,22308306,22308337,22308465,22309719,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22 ...
5853621347008837154202+-NM_0012588745390104815chr2L223244527976161461730,104,123,133,779,1192,106,643,443,109,122,9,43,9,15,21,87,10,40,187,479,612,1391,2583,2689,3332,3775,3884,4197,4208,4256,4274,4297,4728,22308306,22308337,22308464,22309719,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22 ...
58537363570010850184077+-NM_0012588755528104953chr2L223244527976161462030,104,124,66,42,16,133,779,1192,106,643,443,109,122,9,43,9,15,21,87,10,40,187,311,413,597,617,750,1529,2721,2827,3470,3913,4022,4335,4346,4394,4412,4435,4866,22308306,22308337,22308464,22308681,22308802,22309698,22309719,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22 ...
5853522337008837144311+-NM_0012728585281104706chr2L223244527976161461630,104,123,133,779,1192,106,643,443,122,9,43,9,15,21,87,10,40,187,479,612,1391,2583,2689,3332,3775,4088,4099,4147,4165,4188,4619,22308306,22308337,22308464,22309719,22311567,22312404,22313653,22314025,22314730,22315679,22315843,22315852,22315910,22315929,22 ...
5853623346008695154201+-NM_078715524894673chr2L223244527976161461730,104,124,133,779,1192,106,643,443,109,122,9,43,9,15,21,87,9,39,186,337,470,1249,2441,2547,3190,3633,3742,4055,4066,4114,4132,4155,4586,22308306,22308337,22308464,22309719,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22 ...
5853457306009807154407+-NM_1643485155104580chr2L223244527976161461730,20,42,93,779,1192,106,643,443,109,122,9,43,9,15,21,87,10,40,188,278,377,1156,2348,2454,3097,3540,3649,3962,3973,4021,4039,4062,4493,22308306,22308337,22308465,22309729,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22 ...
5853722355009730174093+-NM_164349539194816chr2L223244527976161461930,104,124,66,42,133,779,1192,106,643,443,109,122,9,43,9,15,21,87,9,39,186,310,412,480,613,1392,2584,2690,3333,3776,3885,4198,4209,4257,4275,4298,4729,22308306,22308337,22308464,22308681,22308802,22309719,22311567,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22 ...
5853588342009715154240+-NM_1643505230104655chr2L223244527976161461730,104,123,93,781,1192,106,643,443,109,122,9,43,9,15,21,87,10,40,187,348,450,1231,2423,2529,3172,3615,3724,4037,4048,4096,4114,4137,4568,22308306,22308337,22308464,22309729,22311565,22312404,22313653,22314025,22314730,22315507,22315679,22315843,22315852,22315910,22 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.