Schema for all_est
  Database: equCab3    Primary Table: all_est    Row Count: 40,974   Data last updated: 2018-06-06
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 641smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 353int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 9712int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AB096934varchar(255) values Query sequence name
qSize 372int(10) unsigned range Query sequence size
qStart 18int(10) unsigned range Alignment start position in query
qEnd 372int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 188260577int(10) unsigned range Target sequence size
tStart 7406989int(10) unsigned range Alignment start position in target
tEnd 7417054int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 78,13,81,75,106,longblob   Size of each block
qStarts 18,97,110,191,266,longblob   Start of each block in query.
tStarts 7406989,7407067,7411814,741...longblob   Start of each block in target.

Connected Tables and Joining Fields
        equCab3.all_mrna.qName (via all_est.qName)
      equCab3.estOrientInfo.name (via all_est.qName)
      equCab3.intronEst.qName (via all_est.qName)
      equCab3.refGene.name (via all_est.qName)
      equCab3.refSeqAli.qName (via all_est.qName)
      equCab3.xenoRefGene.name (via all_est.qName)
      equCab3.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6413530001139712+AB09693437218372chr118826057774069897417054578,13,81,75,106,18,97,110,191,266,7406989,7407067,7411814,7412595,7416948,
821562100004821+AB0863635630563chr206534333230998456309998405239,159,131,13,21,0,239,398,529,542,30998456,30998882,30999354,30999805,30999819,
74345600000228456+AB0969334560456chr244828868320716941207458533184,105,167,0,184,289,20716941,20738369,20745686,
11891560000014994+AB0863581600156chr31213517537927553279280682255,101,0,55,79275532,79280581,
11081310000000-AB0863591310131chr68723077668612097686122281131,0,68612097,
12283380000043809+AB5373283570338chr71007876868430789984312046538,147,71,39,43,0,38,185,256,295,84307899,84309242,84310172,84311675,84312003,
12282870001153860+AB5373293070288chr71007876868430789984312046638,147,14,6,39,43,0,38,185,199,206,245,84307899,84309242,84309928,84311660,84311675,84312003,
79135900061055095+AW2609345500369chr118826057727100299271057531022,34,19,3,14,4,7,65,93,98,0,23,58,77,81,96,101,113,178,271,27100299,27100323,27100357,27104042,27104045,27104059,27104063,27104073,27104223,27105655,
8104791010111211-AW2609115075507chr118826057729610205296106961227,20,27,39,159,95,30,13,5,50,4,21,0,28,49,77,117,277,373,404,418,424,476,481,29610205,29610232,29610252,29610279,29610318,29610477,29610572,29610602,29610615,29610620,29610671,29610675,
810669202671336-AW2610597270710chr11882605772961024729610950916,40,21,68,276,165,9,19,83,17,33,76,98,167,448,614,624,644,29610247,29610264,29610306,29610327,29610395,29610674,29610839,29610848,29610867,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.