Schema for mrnaOrientInfo
  Database: equCab3    Primary Table: mrnaOrientInfo    Row Count: 34,354   Data last updated: 2019-07-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 28523int(10) unsigned range Start position in chromosome
chromEnd 29070int(10) unsigned range End position in chromosome
name JL627889varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        equCab3.all_mrna.qName (via mrnaOrientInfo.name)
      equCab3.refFlat.name (via mrnaOrientInfo.name)
      equCab3.refGene.name (via mrnaOrientInfo.name)
      equCab3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr12852329070JL62788900000
585chr16474565500JL61824300000
585chr16630766506JL62047800000
586chr1131450143029EU232117800220
588chr1513535513941JL63442201000
588chr1514217514503JL63342400000
593chr111538801154389JL61775300000
594chr112784281278730JL64158000000
599chr118384741844508JL624754400110
599chr118408891841158JL63729600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.