Schema for mrnaOrientInfo
  Database: felCat3    Primary Table: mrnaOrientInfo    Row Count: 5,660   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_100063varchar(255) values Reference sequence chromosome or scaffold
chromStart 5628int(10) unsigned range Start position in chromosome
chromEnd 14066int(10) unsigned range End position in chromosome
name JV728516varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat3.all_mrna.qName (via mrnaOrientInfo.name)
      felCat3.refFlat.name (via mrnaOrientInfo.name)
      felCat3.refGene.name (via mrnaOrientInfo.name)
      felCat3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_100063562814066JV72851620000
585scaffold_10024060588426JV72839010000
585scaffold_10041232533412AM48951800000
585scaffold_10041232533437AM74638500000
585scaffold_10041232533437AM74643200000
585scaffold_10041232533441AM74643001000
585scaffold_10041232533441AM74643600000
585scaffold_10041232533444AM74637400000
585scaffold_10041232533445AM74642500000
585scaffold_10041232533445AM74644500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.