Schema for xenoRefFlat
  Database: felCat5    Primary Table: xenoRefFlat    Row Count: 314,885   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName DKFZP468A2313varchar(255) values Name of gene as it appears in genome browser.
name NM_001135322varchar(255) values Name of gene
chrom chrE3varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 15884987int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 15901334int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 15893750int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 15901007int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 8int(10) unsigned range Number of exons
exonStarts 15884987,15893731,15894580,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 15885031,15893890,15894715,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        felCat5.xenoMrna.qName (via xenoRefFlat.name)
      felCat5.xenoRefGene.name (via xenoRefFlat.name)
      felCat5.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
DKFZP468A2313NM_001135322chrE3+15884987159013341589375015901007815884987,15893731,15894580,15895185,15898551,15900899,15901155,15901214,15885031,15893890,15894715,15895323,15898708,15901134,15901182,15901334,
PHB2NM_001267700chrC2-1285883381285888081285886431285888087128588338,128588522,128588555,128588590,128588642,128588681,128588787,128588416,128588541,128588568,128588608,128588677,128588782,128588808,
PHB2NM_001267700chrD3+21686468216869482168646821686634421686468,21686544,21686733,21686861,21686540,21686716,21686756,21686948,
PHB2NM_001267700chrD3+23573484235739472357348423573620623573484,23573530,23573581,23573590,23573672,23573805,23573526,23573580,23573589,23573622,23573714,23573947,
PHB2NM_001267700chrA2-98670886986713349867120298671334498670886,98671094,98671176,98671262,98671023,98671159,98671262,98671334,
SUN1NM_001367675chrE3+55988359798255989559643226559883,565977,567587,568759,568894,574623,575377,575578,577590,579391,580216,584513,588004,588046,588214,588704,591554,594004,59 ...559972,566166,567772,568788,568927,574821,575453,575583,577687,579450,580371,584543,588026,588184,588256,588789,591670,594172,59 ...
TSG101NM_001131861chrD1-764957117653437576495711765342361176495711,76497012,76509147,76513683,76518191,76518239,76524858,76527862,76529924,76534194,76534351,76495952,76497215,76509239,76513750,76518234,76518317,76525025,76527925,76530009,76534336,76534375,
PSG8NM_001130167chrE2-12868575128737031286857512873703512868575,12869389,12873362,12873397,12873562,12868767,12869665,12873375,12873538,12873703,
AK3NM_001133752chrX-43807489438089934380832143808993843807489,43807696,43807860,43807903,43807962,43808143,43808318,43808373,43807525,43807846,43807869,43807921,43807987,43808242,43808369,43808993,
Lrrn4clNM_001109579chrD1-1079184301079200201079184301079191234107918430,107919017,107919890,107919978,107918988,107919125,107919967,107920020,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.