Schema for estOrientInfo
  Database: felCat8    Primary Table: estOrientInfo    Row Count: 947   Data last updated: 2016-05-09
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 902smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrB4varchar(255) values Reference sequence chromosome or scaffold
chromStart 41585613int(10) unsigned range Start position in chromosome
chromEnd 41586827int(10) unsigned range End position in chromosome
name AF034791varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 59smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat8.all_est.qName (via estOrientInfo.name)
      felCat8.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
902chrB44158561341586827AF034791559000
107chrX3616914236176787AF19797056000
861chrX3628757436288022AF1979690110300
631chrA160421486042532AW646939000010
652chrA189030468903482AW64675500000
807chrA12917083529179425AW64692450000
955chrA14857243348572918AW64675400000
977chrA15146302351463334AW64675300000
1231chrA18477593784780794AW64676650000
1269chrA18976661989767720AW646765-200021

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.