Schema for all_mrna
  Database: fr1    Primary Table: all_mrna    Row Count: 1,415   Data last updated: 2020-05-07
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2680int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 10int(10) unsigned range Number of inserts in target
tBaseInsert 3244int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AY845027varchar(255) values Query sequence name
qSize 2695int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 2683int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 349519338int(10) unsigned range Target sequence size
tStart 423882int(10) unsigned range Alignment start position in target
tEnd 429809int(10) unsigned range Alignment end position in target
blockCount 11int(10) unsigned range Number of blocks in alignment
blockSizes 777,175,121,183,159,520,179...longblob   Size of each block
qStarts 12,789,964,1085,1268,1427,1...longblob   Start of each block in query.
tStarts 423882,424764,425680,425942...longblob   Start of each block in target.

Connected Tables and Joining Fields
        fr1.all_est.qName (via all_mrna.qName)
      fr1.mrnaOrientInfo.name (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
588268030000103244-AY845027269502683chrUn34951933842388242980911777,175,121,183,159,520,179,124,127,142,176,12,789,964,1085,1268,1427,1947,2126,2250,2377,2519,423882,424764,425680,425942,426498,426746,427723,427979,428222,428679,429633,
5914570000051566+AJ3109114570457chrUn349519338831088833111613,102,95,100,54,93,0,13,115,210,310,364,831088,831663,831844,832074,832880,833018,
59410822000051810-DQ288127108401084chrUn349519338126443412673286283,225,219,192,162,3,0,283,508,727,919,1081,1264434,1265211,1265520,1265911,1267162,1267325,
5962662100126141725-DQ342036270702689chrUn3495193381468114147250215453,163,143,244,169,104,135,180,192,93,43,128,157,163,296,18,471,634,777,1021,1190,1294,1429,1609,1801,1920,1963,2091,2248,2411,1468114,1468678,1468934,1469179,1469537,1469793,1469971,1470306,1470754,1471158,1471301,1471453,1471698,1471933,1472206,
755190000031561+DQ6593315190519chrUn34951933830131073015187498,132,105,184,0,98,230,335,3013107,3013623,3014257,3015003,
7612070970131300+AB236413130701307chrUn349519338327553332771373648,26,630,0,648,677,3275533,3276481,3276507,
6114801500002276-AB0898205271496chrUn349519338348728834880593347,94,54,31,378,472,3487288,3487726,3488005,
61416033020000+AY116072160801608chrUn3495193383852745385435311608,0,3852745,
761024000007842-AB465008103001024chrUn349519338406243640643028112,135,96,105,171,126,204,75,6,118,253,349,454,625,751,955,4062436,4062786,4063114,4063284,4063464,4063707,4063940,4064227,
616394000003395-AB2351273940394chrUn34951933840700884070877442,77,133,142,0,42,119,252,4070088,4070377,4070534,4070735,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.