Schema for all_est
  Database: fr2    Primary Table: all_est    Row Count: 382,280   Data last updated: 2019-03-08
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 422int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 76int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 2int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AL841538varchar(255) values Query sequence name
qSize 506int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 505int(10) unsigned range Alignment end position in query
tName chrMvarchar(255) values Target sequence name
tSize 16447int(10) unsigned range Target sequence size
tStart 1117int(10) unsigned range Alignment start position in target
tEnd 1620int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 469,4,30,longblob   Size of each block
qStarts 0,470,475,longblob   Start of each block in query.
tStarts 1117,1586,1590,longblob   Start of each block in target.

Connected Tables and Joining Fields
        fr2.all_mrna.qName (via all_est.qName)
      fr2.est.qName (via all_est.qName)
      fr2.estOrientInfo.name (via all_est.qName)
      fr2.intronEst.qName (via all_est.qName)
      fr2.xenoMrna.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58542257602200+AL8415385060505chrM16447111716203469,4,30,0,470,475,1117,1586,1590,
58540647502200+AL8415474870487chrM16447112016053466,8,11,0,467,476,1120,1586,1594,
5854205750212211+AL8433135170512chrM16447112016314278,4,188,30,0,279,283,482,1120,1398,1403,1601,
58537227500011+AL8406864500449chrM16447113815882430,19,0,430,1138,1569,
58527917500000+AL8359773550355chrM16447114915041355,0,1149,
58530526901100+AL8406193770377chrM1644711571533253,323,0,54,1157,1210,
58538315911100+AL8436094450445chrM1644711661610274,370,0,75,1166,1240,
5856944900011+AL8438174226128chrM16447119613192117,5,6,123,1196,1314,
5853421900000+AL842235382055chrM1644712031258155,0,1203,
58540824400000+AL8416984540454chrM16447124216961454,0,1242,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.