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Database: fr2 Primary Table: ensGene Row Count: 48,706 Data last updated: 2018-05-08
Format description: A gene prediction with some additional info.
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| name | ENSTRUT00000048539.1 | varchar(255) | values | Name of gene (usually transcript_id from GTF) |
| chrom | chrM | varchar(255) | values | Reference sequence chromosome or scaffold |
| strand | + | char(1) | values | + or - for strand |
| txStart | 0 | int(10) unsigned | range | Transcription start position (or end position for minus strand item) |
| txEnd | 68 | int(10) unsigned | range | Transcription end position (or start position for minus strand item) |
| cdsStart | 68 | int(10) unsigned | range | Coding region start (or end position for minus strand item) |
| cdsEnd | 68 | int(10) unsigned | range | Coding region end (or start position for minus strand item) |
| exonCount | 1 | int(10) unsigned | range | Number of exons |
| exonStarts | 0, | longblob | | Exon start positions (or end positions for minus strand item) |
| exonEnds | 68, | longblob | | Exon end positions (or start positions for minus strand item) |
| score | 0 | int(11) | range | score |
| name2 | ENSTRUG00000019221.1 | varchar(255) | values | Alternate name (e.g. gene_id from GTF) |
| cdsStartStat | none | enum('none', 'unk', 'incmpl', 'cmpl') | values | Status of CDS start annotation (none, unknown, incomplete, or complete) |
| cdsEndStat | none | enum('none', 'unk', 'incmpl', 'cmpl') | values | Status of CDS end annotation (none, unknown, incomplete, or complete) |
| exonFrames | -1, | longblob | | Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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| 585 | ENSTRUT00000048539.1 | chrM | + | 0 | 68 | 68 | 68 | 1 | 0, | 68, | 0 | ENSTRUG00000019221.1 | none | none | -1, |
| 585 | ENSTRUT00000048540.1 | chrM | + | 68 | 1015 | 1015 | 1015 | 1 | 68, | 1015, | 0 | ENSTRUG00000019222.1 | none | none | -1, |
| 585 | ENSTRUT00000048541.1 | chrM | + | 1015 | 1089 | 1089 | 1089 | 1 | 1015, | 1089, | 0 | ENSTRUG00000019223.1 | none | none | -1, |
| 585 | ENSTRUT00000048542.1 | chrM | + | 1089 | 2755 | 2755 | 2755 | 1 | 1089, | 2755, | 0 | ENSTRUG00000019224.1 | none | none | -1, |
| 585 | ENSTRUT00000048543.1 | chrM | + | 2755 | 2828 | 2828 | 2828 | 1 | 2755, | 2828, | 0 | ENSTRUG00000019225.1 | none | none | -1, |
| 585 | ENSTRUT00000047991.1 | chrM | + | 2828 | 3803 | 2828 | 3803 | 1 | 2828, | 3803, | 0 | ENSTRUG00000018673.1 | cmpl | cmpl | 0, |
| 585 | ENSTRUT00000048544.1 | chrM | + | 3805 | 3875 | 3875 | 3875 | 1 | 3805, | 3875, | 0 | ENSTRUG00000019226.1 | none | none | -1, |
| 585 | ENSTRUT00000048545.1 | chrM | - | 3874 | 3945 | 3945 | 3945 | 1 | 3874, | 3945, | 0 | ENSTRUG00000019227.1 | none | none | -1, |
| 585 | ENSTRUT00000048546.1 | chrM | + | 3944 | 4013 | 4013 | 4013 | 1 | 3944, | 4013, | 0 | ENSTRUG00000019228.1 | none | none | -1, |
| 585 | ENSTRUT00000047992.1 | chrM | + | 4013 | 5060 | 4013 | 5060 | 1 | 4013, | 5060, | 0 | ENSTRUG00000018674.1 | cmpl | cmpl | 0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server