Schema for mrnaOrientInfo
  Database: galGal3    Primary Table: mrnaOrientInfo    Row Count: 38,902   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 10132int(10) unsigned range Start position in chromosome
chromEnd 20913int(10) unsigned range End position in chromosome
name CR385728varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal3.all_mrna.qName (via mrnaOrientInfo.name)
      galGal3.refFlat.name (via mrnaOrientInfo.name)
      galGal3.refGene.name (via mrnaOrientInfo.name)
      galGal3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11013220913CR38572840000
585chr11375120858DQ15649530000
585chr13390338766CR35248040100
585chr16910383498AJ7192841316000
585chr19661098950BX929788-40000
585chr19661198961CR73287240000
585chr199064102963BX93096770000
585chr199065102963BX93316770000
585chr1100907102963BX95054530000
588chr1401048406773BX93173680000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.