Schema for xenoRefFlat
  Database: galGal3    Primary Table: xenoRefFlat    Row Count: 262,009   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName src-1varchar(255) values Name of gene as it appears in genome browser.
name NM_001306492varchar(255) values Name of gene
chrom chr3varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 66702432int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 66709593int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 66702432int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 66709593int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 66702432,66707301,66707403,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 66702588,66707394,66707436,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal3.xenoMrna.qName (via xenoRefFlat.name)
      galGal3.xenoRefGene.name (via xenoRefFlat.name)
      galGal3.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
src-1NM_001306492chr3+66702432667095936670243266709593466702432,66707301,66707403,66709434,66702588,66707394,66707436,66709593,
chaf1a.SNM_001095620chr28+2033708204567020337082045670122033708,2038801,2039413,2039975,2040455,2041204,2041549,2041742,2042036,2042912,2043089,2045613,2033753,2038815,2039471,2040044,2040527,2041324,2041624,2041796,2042150,2042996,2043269,2045670,
Zfp358NM_001108328chr1-95222232952226799522223295222679295222232,95222556,95222526,95222679,
AKR1B1NM_001252416chr1-64256811642875596425681164287556964256811,64257628,64258237,64258477,64272467,64272976,64274922,64287048,64287490,64256890,64257705,64258322,64258563,64272488,64273101,64275039,64287216,64287559,
chp1.LNM_001091906chr5+26686680267016592668668026701659926686680,26686932,26690980,26697270,26698216,26698614,26699122,26700232,26701605,26686747,26686934,26691046,26697356,26698339,26698619,26699177,26700362,26701659,
rplp2.SNM_001092006chr2+1513422531513423281513422531513423281151342253,151342328,
rplp2.SNM_001092006chr5-16870506168746481687050616874645516870506,16871054,16872769,16874505,16874517,16870589,16871115,16872808,16874508,16874648,
Ift27NM_001130495chr1+53632599536356335363259953635633353632599,53634487,53635513,53632683,53634547,53635633,
LHCGRNM_214449chr5+43232788432507934323278843250793343232788,43249863,43250430,43232866,43250400,43250793,
HBE1NM_214447chr1+1994338141994380191994338141994380192199433814,199437959,199434040,199438019,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.