Schema for xenoRefFlat
  Database: galGal4    Primary Table: xenoRefFlat    Row Count: 246,196   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC617079varchar(255) values Name of gene as it appears in genome browser.
name NM_001098469varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 145358480int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 145370716int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 145358480int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 145370716int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 145358480,145370607,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 145358530,145370716,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal4.xenoMrna.qName (via xenoRefFlat.name)
      galGal4.xenoRefGene.name (via xenoRefFlat.name)
      galGal4.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC617079NM_001098469chr1+1453584801453707161453584801453707162145358480,145370607,145358530,145370716,
KCNH2NM_000238chr2+33065233574333065233574311330652,330857,332413,332587,333334,333607,333938,334319,334748,335387,335715,330850,331082,332587,332792,333534,333860,334132,334418,334776,335568,335743,
SYNPRNM_001266609chr12+13443049134732571344312513472547713443049,13455138,13465968,13471528,13472279,13472535,13473238,13443150,13455262,13466167,13471719,13472475,13472547,13473257,
GrhprNM_001113754chrZ-81472099814767748147211181476774881472099,81473689,81474153,81474797,81474959,81475614,81476262,81476697,81472233,81473813,81474291,81474800,81475058,81475705,81476378,81476774,
fblNM_001170677chr13+405585340608834055853406088374055853,4056144,4057805,4058047,4058411,4058903,4060772,4056090,4056204,4057897,4058049,4058569,4059035,4060883,
MADDNM_130474chr5-223467742240256822348869224025653322346774,22348846,22358500,22360462,22361853,22362102,22362895,22363916,22365144,22366275,22367230,22369681,22370106,22378238,22 ...22346825,22348893,22358607,22360535,22362018,22362210,22363006,22364022,22365267,22366316,22367389,22369759,22370181,22378280,22 ...
LDHBNM_001195809chr1+67178425671874876717842567187487967178425,67178473,67178777,67181328,67181914,67184365,67185852,67186429,67187319,67178464,67178551,67178779,67181444,67182088,67184539,67185970,67186553,67187487,
Zfp74NM_001271339chr2-3899034050013899034050014389903,390086,404629,404845,390077,390098,404815,405001,
PTGS1NM_001105323chr8+981154098164429811540981644279811540,9812376,9812971,9813929,9814272,9815403,9816163,9811657,9812523,9813115,9813953,9814426,9815576,9816442,
LOC534630NM_001206548chr4-154530215460851545302154608531545302,1545556,1545968,1545437,1545685,1546085,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.