Schema for estOrientInfo
  Database: galGal5    Primary Table: estOrientInfo    Row Count: 679,129   Data last updated: 2020-05-07
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 855smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 35506144int(10) unsigned Start position in chromosome
chromEnd 35509222int(10) unsigned End position in chromosome
name AA495708varchar(255) Accession of EST
intronOrientation 3smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal5.all_est.qName (via estOrientInfo.name)
      galGal5.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
855chr13550614435509222AA49570830000
1175chr17735377877354513AA49570130000
1526chr1123358596123360090AA49571910000
729chr111899136918992874AA49571530000
590chr19659693660750AA49569631000
699chr21501773815020940AA49569920000
669chr201109820811100706AA49570430000
9chr2352425435243972AA49570020000
609chr2632450843252858AA49571450000
612chr2735808903583058AA49571830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.