Schema for all_est
  Database: gasAcu1    Primary Table: all_est    Row Count: 302,213   Data last updated: 2016-03-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1164int(10) unsigned range Number of bases that match that aren't repeats
misMatches 15int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 2int(10) unsigned range Number of 'N' bases
qNumInsert 5int(10) unsigned range Number of inserts in query
qBaseInsert 12int(10) unsigned range Number of bases inserted in query
tNumInsert 6int(10) unsigned range Number of inserts in target
tBaseInsert 14int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CD500210varchar(255) values Query sequence name
qSize 1209int(10) unsigned range Query sequence size
qStart 2int(10) unsigned range Alignment start position in query
qEnd 1195int(10) unsigned range Alignment end position in query
tName chrIvarchar(255) values Target sequence name
tSize 28185914int(10) unsigned range Target sequence size
tStart 13364int(10) unsigned range Alignment start position in target
tEnd 14559int(10) unsigned range Alignment end position in target
blockCount 10int(10) unsigned range Number of blocks in alignment
blockSizes 5,4,17,35,984,56,15,9,14,42,longblob   Size of each block
qStarts 2,7,11,29,64,1049,1106,1121...longblob   Start of each block in query.
tStarts 13364,13371,13376,13395,134...longblob   Start of each block in target.

Connected Tables and Joining Fields
        gasAcu1.all_mrna.qName (via all_est.qName)
      gasAcu1.est.qName (via all_est.qName)
      gasAcu1.estOrientInfo.name (via all_est.qName)
      gasAcu1.intronEst.qName (via all_est.qName)
      gasAcu1.refGene.name (via all_est.qName)
      gasAcu1.refSeqAli.qName (via all_est.qName)
      gasAcu1.xenoMrna.qName (via all_est.qName)
      gasAcu1.xenoRefGene.name (via all_est.qName)
      gasAcu1.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58511641502512614+CD500210120921195chrI281859141336414559105,4,17,35,984,56,15,9,14,42,2,7,11,29,64,1049,1106,1121,1138,1153,13364,13371,13376,13395,13431,14415,14471,14487,14503,14517,
585102427022829-CD500209111511062chrI281859141370614768419,71,35,928,53,73,151,186,13706,13725,13804,13840,
5859851802841531+CD4997851193101056chrI281859144123542271115,5,883,18,25,14,15,9,11,8,12,10,15,20,904,926,959,974,990,1000,1035,1044,41235,41241,41247,42130,42151,42182,42196,42211,42220,42251,42259,
5868871500969107511+CD50490410980971chrI2818591416367517208816102,24,63,136,216,125,143,12,26,8,7,6,6,13,4,11,0,102,127,190,326,542,667,810,830,857,870,923,930,940,954,960,163675,169307,169331,170180,170783,171101,171463,171868,171887,171913,171925,172046,172052,172060,172073,172077,
58637551101443537+CD499326115750445chrI2818591420000520393358,61,191,65,66,50,62,123,314,379,200005,200018,202221,202480,203867,
586955112304993298-CD4993271180101008chrI281859142023822066691222,9,6,52,133,72,174,162,341,5,4,9,172,195,210,217,269,402,474,648,810,1151,1156,1161,202382,202404,202487,202493,203867,204339,204740,206062,206303,206646,206652,206660,
5876661000051651-CD4933096870667chrI28185914356910359228654,185,135,161,84,48,20,74,259,394,555,639,356910,356965,357520,357960,358207,359180,
58764112000051651+CD49331078726679chrI28185914356923359227633,193,135,161,84,47,26,59,252,387,548,632,356923,356957,357520,357960,358207,359180,
5871028500527161974+CD5064821179131073chrI28185914384884387891187,10,33,125,245,88,133,92,89,82,29,21,25,7,9,13,16,9,13,20,31,68,196,441,529,662,754,843,925,954,975,1000,1007,1030,1043,1064,384884,384892,384905,384943,385068,386457,386621,386835,387166,387438,387521,387551,387652,387678,387686,387846,387860,387882,
587105670036113398-CD506481109001069chrI281859143849983894591430,40,49,5,17,171,88,133,92,89,133,45,77,94,21,52,95,144,151,168,339,427,560,652,741,874,919,996,384998,385028,385068,385118,385124,385142,386457,386621,386835,387166,387438,387650,387830,389365,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.