Schema for xenoRefFlat
  Database: geoFor1    Primary Table: xenoRefFlat    Row Count: 378,647   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ZNF517varchar(255) values Name of gene as it appears in genome browser.
name NM_001384905varchar(255) values Name of gene
chrom JH740268varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 12287int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 79509int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 12287int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 79509int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 12287,12636,24271,56395,79416,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 12384,12724,24313,56475,79509,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        geoFor1.xenoRefGene.name (via xenoRefFlat.name)
      geoFor1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ZNF517NM_001384905JH740268+12287795091228779509512287,12636,24271,56395,79416,12384,12724,24313,56475,79509,
ZNF517NM_213605JH740268+12287795091228779509512287,12636,24271,56395,79416,12384,12724,24313,56475,79509,
S1PR1NM_001134073JH739926+543597754370405435977543704025435977,5436023,5436017,5437040,
ZNF836NM_001102657JH740315-75761204775761204757576,7825,7978,11371,11687,7645,7843,8151,11603,12047,
rbp2bNM_001002307JH739970+337432033744193374320337441913374320,3374419,
NDFIP2NM_001030820JH739895-762398079538377953837795383757623980,7624077,7624120,7693401,7953762,7624025,7624091,7624176,7693434,7953837,
P2RY4NM_001198703JH740120+3039903051933039903051934303990,304277,304338,305103,304005,304283,304824,305193,
rai14NM_001113028JH739991+56970130635569851306351356970,94732,113447,118633,122654,124252,124456,124597,126398,126680,127487,129629,130602,57021,94864,113507,118738,122744,124274,124459,124714,126410,126737,127634,129677,130635,
ROCK1NM_001163985JH739908+5885906592354358859065923543245885906,5892062,5894779,5900669,5900819,5903188,5904962,5905880,5908423,5908435,5908904,5910270,5910375,5911757,5912486,5914370, ...5885994,5892196,5895034,5900812,5900823,5903320,5905040,5906006,5908430,5908493,5908937,5910330,5910516,5911787,5912585,5914421, ...
LY75NM_001184946JH739888-145827741462147414582774146214741714582774,14586587,14587721,14588986,14590009,14591285,14593144,14596375,14599594,14605138,14605765,14611306,14612842,14616683,14 ...14582834,14586629,14587880,14589028,14590093,14591366,14593282,14596429,14599660,14605171,14605846,14611420,14612908,14616764,14 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.