Schema for xenoRefFlat
  Database: gorGor4    Primary Table: xenoRefFlat    Row Count: 242,648   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName MED24varchar(255) values Name of gene as it appears in genome browser.
name NM_001267797varchar(255) values Name of gene
chrom chr5varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 43428822int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 43464246int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 43429635int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 43463829int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 26int(10) unsigned range Number of exons
exonStarts 43428822,43429598,43429861,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 43428870,43429765,43429944,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        gorGor4.xenoRefGene.name (via xenoRefFlat.name)
      gorGor4.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
MED24NM_001267797chr5+434288224346424643429635434638292643428822,43429598,43429861,43447528,43447974,43449867,43450118,43450562,43451233,43451737,43452112,43453499,43454390,43455409,43 ...43428870,43429765,43429944,43447602,43448207,43449979,43450269,43450676,43451281,43451820,43452199,43453611,43454533,43455447,43 ...
SLC37A4NM_001467chr11-1190105941190174011190113931190158679119010594,119011674,119012447,119013083,119013417,119014112,119014677,119015719,119017372,119011560,119011813,119012561,119013169,119013576,119014356,119014910,119016061,119017401,
Adamts3NM_001107212chr4-830899308338172383096937833816362383089930,83090073,83090415,83096829,83103690,83106315,83111974,83114001,83117409,83119063,83120306,83121693,83123875,83126585,83 ...83090041,83090330,83090723,83096947,83103823,83106481,83112138,83114082,83117533,83119197,83120482,83121840,83123988,83126718,83 ...
TDRD5NM_001199091chr1+15878049715888568115878150315888535118158780497,158781194,158782347,158784526,158807554,158809994,158819705,158823203,158824411,158828586,158829127,158839316,15884049 ...158780550,158781735,158782755,158784717,158807638,158810051,158819859,158823376,158824632,158828799,158829194,158839517,15884064 ...
Agr2NM_001106725chr7-16741601167505071674160116750483716741601,16743630,16746324,16748442,16749840,16750006,16750344,16741651,16743714,16746393,16748509,16749893,16750070,16750507,
hnrnpabaNM_212587chr5+1622766691622818831622766691622814376162276669,162277557,162277919,162280144,162281421,162281857,162276837,162277716,162278052,162280229,162281437,162281883,
polr2gNM_001017065chr11+61904114619085966190411461908596661904114,61905178,61907507,61907664,61907977,61908560,61904217,61905345,61907558,61907730,61908049,61908596,
tmem117.SNM_001096969chr12-41908793424500454190879342450045941908793,41920599,42001352,42084948,42145992,42349387,42349569,42441875,42449766,41909276,41920731,42001512,42085046,42146089,42349392,42349693,42441880,42450045,
MOGNM_001008228chr6+30282817302979653028293530296799830282817,30285039,30291805,30293276,30293537,30296311,30296785,30297943,30283020,30285388,30291904,30293297,30293558,30296335,30297624,30297965,
cox6b1.LNM_001171702chr22+24089971240901212408997724090121124089971,24090121,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.