Schema for xenoRefSeqAli
  Database: hetGla1    Primary Table: xenoRefSeqAli    Row Count: 541,090   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 2733int(10) unsigned Number of bases that match that aren't repeats
misMatches 223int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 161int(10) unsigned Number of 'N' bases
qNumInsert 6int(10) unsigned Number of inserts in query
qBaseInsert 66int(10) unsigned Number of bases inserted in query
tNumInsert 27int(10) unsigned Number of inserts in target
tBaseInsert 94310int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName NM_174782varchar(255) Query sequence name
qSize 4102int(10) unsigned Query sequence size
qStart 911int(10) unsigned Alignment start position in query
qEnd 4094int(10) unsigned Alignment end position in query
tName JH165516varchar(255) Target sequence name
tSize 421348int(10) unsigned Target sequence size
tStart 56039int(10) unsigned Alignment start position in target
tEnd 153466int(10) unsigned Alignment end position in target
blockCount 30int(10) unsigned Number of blocks in alignment
blockSizes 105,192,122,76,96,140,108,1...longblob Size of each block
qStarts 911,1022,1214,1336,1412,150...longblob Start of each block in query.
tStarts 56039,56144,80269,81181,816...longblob Start of each block in target.

Connected Tables and Joining Fields
        hetGla1.all_mrna.qName (via xenoRefSeqAli.qName)
      hetGla1.xenoMrna.qName (via xenoRefSeqAli.qName)
      hetGla1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      hetGla1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73273322301616662794310++NM_17478241029114094JH1655164213485603915346630105,192,122,76,96,140,108,110,127,85,152,108,124,100,158,100,112,42,96,107,80,126,39,60,31,110,66,135,68,142,911,1022,1214,1336,1412,1508,1649,1757,1867,1994,2079,2231,2339,2463,2563,2721,2821,2933,2978,3074,3181,3261,3387,3426,3518,3549 ...56039,56144,80269,81181,81645,105908,108364,110036,115156,115436,117898,124363,125620,126835,128416,129779,133814,135060,135102, ...
7330832640161101843094418++NM_00131016644086594351JH1655164213485603915396535105,192,122,76,96,140,108,109,128,85,152,108,124,100,158,100,112,42,96,107,80,126,48,60,31,110,66,135,68,164,179,70,29,34,48,659,767,959,1081,1157,1253,1394,1502,1611,1739,1824,1976,2084,2208,2308,2466,2566,2678,2723,2819,2926,3006,3132,3180,3272,3303,3 ...56039,56144,80269,81181,81645,105908,108364,110036,115155,115436,117898,124363,125620,126835,128416,129779,133814,135060,135102, ...
73322837402051821224596271++NM_00919465205736502JH1655164213485603915611747105,189,123,75,96,138,3,107,109,128,85,152,108,124,100,158,101,111,42,93,106,80,126,48,59,31,110,66,135,68,181,15,12,129,48,67,1 ...573,678,867,990,1065,1161,1299,1302,1409,1519,1647,1732,1884,1992,2116,2216,2374,2475,2586,2634,2727,2834,2914,3040,3088,3180,32 ...56039,56147,80269,81182,81645,105908,106132,108364,110035,115155,115436,117898,124363,125620,126835,128416,129779,133815,135060, ...
73332842902052218774496125++NM_03179864025626401JH1655164213485603915612647105,189,122,76,96,140,107,110,128,85,152,108,124,100,156,100,112,42,96,106,80,126,48,59,31,110,66,135,68,232,15,60,67,62,108,14, ...562,667,856,978,1054,1150,1291,1398,1508,1636,1721,1873,1981,2105,2207,2363,2463,2575,2620,2716,2823,2903,3029,3077,3169,3200,33 ...56039,56147,80269,81181,81645,105908,108364,110035,115155,115436,117898,124363,125620,126835,128418,129779,133814,135060,135102, ...
7336012660186166153994833++NM_00126178554816215289JH1655164213485604115492743295,122,76,96,139,110,109,128,85,152,108,124,100,158,100,112,42,96,107,80,126,47,60,31,110,66,135,68,384,27,24,39,13,29,45,66,42 ...621,916,1038,1114,1210,1349,1459,1568,1696,1781,1933,2041,2165,2265,2423,2523,2635,2680,2776,2883,2963,3090,3137,3229,3260,3373, ...56041,80269,81181,81645,105908,108362,110036,115155,115436,117898,124363,125620,126835,128416,129779,133814,135060,135102,137707 ...
94779726016632330855270829+-NM_02034395452469225JH2047665479531295889132353915989,49,39,4,178,115,139,133,56,231,165,138,149,112,238,165,70,98,60,177,192,101,156,122,136,97,116,69,138,184,753,68,120,156,159, ...246,443,494,533,537,715,830,969,1105,1161,1400,1565,1703,1852,1964,2202,2435,2505,2603,2694,2871,3063,3164,3320,3442,3644,3741,3 ...2244140,2278765,2299256,2300404,2302519,2303415,2306313,2308019,2308152,2312208,2317040,2318086,2321427,2325516,2331294,2335411, ...
7528613980221296127165887+-NM_02083145222414483JH1675812953587250632726754952864,261,66,56,76,162,179,3,140,158,33,4,167,453,117,22,177,150,64,531,24,36,126,23,13,45,33,98,241,305,566,632,688,764,926,1105,1108,1248,1474,1507,1511,1678,2172,2483,2512,2689,2839,2903,3513,3673,3879,4037,4075,4232,4307, ...278092,320599,406780,429721,433052,433809,436882,437103,437547,439785,440011,440213,440222,441138,441599,441871,441897,442674,44 ...
5852138800271271++NR_130142851177348106JH1713771530115615283108,69,124,7734,7881,7982,1156,1303,1404,
586609820010111381246++NR_1045843229581862JH17138765809321717321911011128,160,12,13,45,54,25,10,34,159,51,58,247,414,455,503,612,778,807,1062,1208,1811,217173,217301,217466,217509,217555,217667,217844,217869,218202,218481,219059,
73993300119221197536++NR_13716915772893910993JH1714132625496194379392047242,90,8939,10903,194379,391957,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.