Schema for affyU133Plus2
  Database: hg19    Primary Table: affyU133Plus2    Row Count: 58,463   Data last updated: 2010-11-29
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 530int(10) unsigned range Number of bases that match that aren't repeats
misMatches 4int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 23int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 41int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 898int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName 225995_x_atvarchar(255) values Query sequence name
qSize 637int(10) unsigned range Query sequence size
qStart 5int(10) unsigned range Alignment start position in query
qEnd 603int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 249250621int(10) unsigned range Target sequence size
tStart 14361int(10) unsigned range Alignment start position in target
tEnd 15816int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 93,144,229,70,21,longblob   Size of each block
qStarts 34,132,278,541,611,longblob   Start of each block in query.
tStarts 14361,14454,14599,14968,15795,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg19.knownToU133Plus2.value (via affyU133Plus2.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58553040233413898-225995_x_at6375603chr12492506211436115816593,144,229,70,21,34,132,278,541,611,14361,14454,14599,14968,15795,
5853355170109967911621-225035_x_at363503548chr124925062114381294831773,375,71,165,303,360,198,661,201,1,260,250,74,73,98,155,163,87,165,540,647,818,1123,1484,1682,2343,2545,2546,2808,3058,3133,3206,3317,3472,14381,14454,14969,15075,15240,15543,15903,16104,16853,17054,17232,17492,17914,17988,18267,24736,29320,
5854156140831618293-226340_x_at431834274chr1249250621143991874518690,10,32,33,376,4,5,15,5,11,7,41,277,859,141,51,443,1253,44,735,746,779,813,1190,1195,1201,1217,1223,1235,1243,1285,1564,2423,2565,2617,3062,14399,15089,15099,15131,15164,15540,15544,15549,15564,15569,15580,15587,15628,15906,16857,16998,17049,17492,
58546679068214235743-1557034_s_at4834484834chr124925062114406248932399,352,286,24,49,14,6,5,8,149,14,44,98,12,10,355,837,59,8,1500,133,624,58,0,99,452,739,764,814,829,836,842,851,1001,1016,1061,1160,1173,1184,1540,2381,2441,2450,3951,4103,4728,14406,20227,20579,20865,20889,20938,20952,20958,20963,20971,21120,21134,21178,21276,21288,21298,21653,22492,22551,22559,24059,24 ...
58551801401671038129-231811_at539905399chr1249250621196882507811131,26,1300,6,4,11,4,7,358,3359,155,0,132,159,1460,1467,1472,1484,1489,1497,1856,5244,19688,19819,19845,21145,21151,21155,21166,21170,21177,21535,24923,
58546850140000-236841_at4870487chr124925062127542280291487,0,27542,
5857233061112+228609_at7330733chr124925062128444291783145,125,462,0,145,271,28444,28591,28716,
5851180008112340-1555822_at119011190chr124925062134553360814620,127,80,361,0,620,748,828,34553,35274,35401,35720,
73258521056221146561-231949_at2676122676chr1249250621875432367664511,1583,303,265,0,512,2095,2399,87543,88054,236198,236501,
58513642307522413247-1558529_s_at150631506chr1249250621893969110524367,174,113,178,4,3,4,12,12,20,8,9,29,5,8,15,8,5,10,16,8,6,249,199,0,370,545,658,838,843,847,852,866,879,900,909,919,949,955,964,982,991,997,1008,1038,1047,1054,1304,89396,89763,89937,90286,90464,90468,90471,90475,90487,90499,90519,90527,90536,90565,90570,90578,90594,90602,90607,90617,90643,90 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.