Schema for knownGeneMrna
  Database: hg19    Primary Table: knownGeneMrna    Row Count: 381,930   Data last updated: 2024-08-23
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENST00000833856.1_1varchar(255) values Name of gene
seq AACCCTAACCTCGCGGTACCCTCAGCC...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via knownGeneMrna.name)
      hg19.ceBlastTab.query (via knownGeneMrna.name)
      hg19.dmBlastTab.query (via knownGeneMrna.name)
      hg19.drBlastTab.query (via knownGeneMrna.name)
      hg19.foldUtr3.name (via knownGeneMrna.name)
      hg19.foldUtr5.name (via knownGeneMrna.name)
      hg19.gnfAtlas2Distance.query (via knownGeneMrna.name)
      hg19.gnfAtlas2Distance.target (via knownGeneMrna.name)
      hg19.gnfU95Distance.query (via knownGeneMrna.name)
      hg19.gnfU95Distance.target (via knownGeneMrna.name)
      hg19.humanHprdP2P.query (via knownGeneMrna.name)
      hg19.humanHprdP2P.target (via knownGeneMrna.name)
      hg19.humanVidalP2P.query (via knownGeneMrna.name)
      hg19.humanVidalP2P.target (via knownGeneMrna.name)
      hg19.humanWankerP2P.query (via knownGeneMrna.name)
      hg19.humanWankerP2P.target (via knownGeneMrna.name)
      hg19.keggPathway.kgID (via knownGeneMrna.name)
      hg19.kgAlias.kgID (via knownGeneMrna.name)
      hg19.kgColor.kgID (via knownGeneMrna.name)
      hg19.kgProtAlias.kgID (via knownGeneMrna.name)
      hg19.kgProtMap2.qName (via knownGeneMrna.name)
      hg19.kgSpAlias.kgID (via knownGeneMrna.name)
      hg19.kgTargetAli.qName (via knownGeneMrna.name)
      hg19.kgTxInfo.name (via knownGeneMrna.name)
      hg19.kgXref.kgID (via knownGeneMrna.name)
      hg19.knownAttrs.kgID (via knownGeneMrna.name)
      hg19.knownBlastTab.query (via knownGeneMrna.name)
      hg19.knownBlastTab.target (via knownGeneMrna.name)
      hg19.knownCanonToDecipher.name (via knownGeneMrna.name)
      hg19.knownCanonical.transcript (via knownGeneMrna.name)
      hg19.knownCds.name (via knownGeneMrna.name)
      hg19.knownGene.name (via knownGeneMrna.name)
      hg19.knownGenePep.name (via knownGeneMrna.name)
      hg19.knownGeneTxMrna.name (via knownGeneMrna.name)
      hg19.knownGeneTxPep.name (via knownGeneMrna.name)
      hg19.knownIsoforms.transcript (via knownGeneMrna.name)
      hg19.knownToAllenBrain.name (via knownGeneMrna.name)
      hg19.knownToDecipher.name (via knownGeneMrna.name)
      hg19.knownToEnsembl.name (via knownGeneMrna.name)
      hg19.knownToGnfAtlas2.name (via knownGeneMrna.name)
      hg19.knownToHInv.name (via knownGeneMrna.name)
      hg19.knownToHprd.name (via knownGeneMrna.name)
      hg19.knownToKeggEntrez.name (via knownGeneMrna.name)
      hg19.knownToLocusLink.name (via knownGeneMrna.name)
      hg19.knownToLynx.name (via knownGeneMrna.name)
      hg19.knownToMrna.name (via knownGeneMrna.name)
      hg19.knownToMrnaSingle.name (via knownGeneMrna.name)
      hg19.knownToMupit.name (via knownGeneMrna.name)
      hg19.knownToNextProt.name (via knownGeneMrna.name)
      hg19.knownToPfam.name (via knownGeneMrna.name)
      hg19.knownToRefSeq.name (via knownGeneMrna.name)
      hg19.knownToSuper.gene (via knownGeneMrna.name)
      hg19.knownToTag.name (via knownGeneMrna.name)
      hg19.knownToTreefam.name (via knownGeneMrna.name)
      hg19.knownToU133.name (via knownGeneMrna.name)
      hg19.knownToU133Plus2.name (via knownGeneMrna.name)
      hg19.knownToU95.name (via knownGeneMrna.name)
      hg19.knownToVisiGene.name (via knownGeneMrna.name)
      hg19.knownToWikipedia.name (via knownGeneMrna.name)
      hg19.mmBlastTab.query (via knownGeneMrna.name)
      hg19.rnBlastTab.query (via knownGeneMrna.name)
      hg19.scBlastTab.query (via knownGeneMrna.name)
      hg19.ucscScop.ucscId (via knownGeneMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)

Sample Rows
 
nameseq
ENST00000833856.1_1AACCCTAACCTCGCGGTACCCTCAGCCGGCCCGCCCGCCCGGGTCTGACCTGAGGAGAACTGTGCTCCGCCTTCAGAGTACCACCGAAATCTGTGCAGAGGACAACGCAGCTCCGCCCTCGCGGT
ENST00000832824.1_1CGCAGAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGG ...
ENST00000832825.1_1GAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCA ...
ENST00000832826.1_1CCTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAA ...
ENST00000832827.1_1CTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAAA ...
ENST00000832828.1_1GACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAAAGTAAAAAATAAATAT ...
ENST00000832829.1_1GAGAATGACTGCGCAAATTTGCCGGATTTCCTTTGCTGTTCCTGCATGTAGTTTAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTG ...
ENST00000832830.1_1AGTTTAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCC ...
ENST00000832837.1_1TAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTG ...
ENST00000832836.1_1AAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGT ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.