Schema for wgEncodeGencodeTranscriptSupportV25

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Schema for wgEncodeGencodeTranscriptSupportV25

Database: hg38 Primary Table: wgEncodeGencodeTranscriptSupportV25 Row Count: 87,051 Data last updated: 2016-07-23
Format description: GENCODE transcript support from other datasets
On download server: MariaDB table dump directory

field	example	SQL type	info	description
`transcriptId`	ENST00000335137.3	`varchar(255)`	values	GENCODE transcript identifier
`seqId`	BC136867.1	`varchar(255)`	values	Identifier of sequence supporting transcript
`seqSrc`	EMBL	`varchar(255)`	values	Source of supporting sequence

Connected Tables and Joining Fields


	hg38.wgEncodeGencodeAttrsV25.transcriptId (via wgEncodeGencodeTranscriptSupportV25.transcriptId)

Sample Rows

transcriptId	seqId	seqSrc
ENST00000335137.3	BC136867.1	EMBL
ENST00000335137.3	CCDS30547.1	CCDS
ENST00000610542.1	BC122537.1	EMBL
ENST00000624431.1	AM992878.1	EMBL
ENST00000624431.1	B7ZGX9.1	Uniprot/SPTREMBL
ENST00000623834.3	BC063555.1	EMBL
ENST00000623834.3	Q9NSV7.2	Uniprot/SPTREMBL
ENST00000623083.3	BC094698.1	EMBL
ENST00000623083.3	Q6VEQ5.2	Uniprot/SWISSPROT
ENST00000624735.1	BC073149.1	EMBL

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.