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Database: loxAfr3 Primary Table: ensGene Row Count: 28,847 Data last updated: 2021-05-25
Format description: A gene prediction with some additional info.
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| name | ENSLAFT00000038035.1 | varchar(255) | values | Name of gene (usually transcript_id from GTF) |
| chrom | chrM | varchar(255) | values | Reference sequence chromosome or scaffold |
| strand | + | char(1) | values | + or - for strand |
| txStart | 0 | int(10) unsigned | range | Transcription start position (or end position for minus strand item) |
| txEnd | 71 | int(10) unsigned | range | Transcription end position (or start position for minus strand item) |
| cdsStart | 71 | int(10) unsigned | range | Coding region start (or end position for minus strand item) |
| cdsEnd | 71 | int(10) unsigned | range | Coding region end (or start position for minus strand item) |
| exonCount | 1 | int(10) unsigned | range | Number of exons |
| exonStarts | 0, | longblob | | Exon start positions (or end positions for minus strand item) |
| exonEnds | 71, | longblob | | Exon end positions (or start positions for minus strand item) |
| score | 0 | int(11) | range | score |
| name2 | ENSLAFG00000033269.1 | varchar(255) | values | Alternate name (e.g. gene_id from GTF) |
| cdsStartStat | none | enum('none', 'unk', 'incmpl', 'cmpl') | values | Status of CDS start annotation (none, unknown, incomplete, or complete) |
| cdsEndStat | none | enum('none', 'unk', 'incmpl', 'cmpl') | values | Status of CDS end annotation (none, unknown, incomplete, or complete) |
| exonFrames | -1, | longblob | | Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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| 585 | ENSLAFT00000038035.1 | chrM | + | 0 | 71 | 71 | 71 | 1 | 0, | 71, | 0 | ENSLAFG00000033269.1 | none | none | -1, |
| 585 | ENSLAFT00000038036.1 | chrM | + | 71 | 1031 | 1031 | 1031 | 1 | 71, | 1031, | 0 | ENSLAFG00000033270.1 | none | none | -1, |
| 585 | ENSLAFT00000038037.1 | chrM | + | 1032 | 1099 | 1099 | 1099 | 1 | 1032, | 1099, | 0 | ENSLAFG00000033271.1 | none | none | -1, |
| 585 | ENSLAFT00000038038.1 | chrM | + | 1100 | 2665 | 2665 | 2665 | 1 | 1100, | 2665, | 0 | ENSLAFG00000033272.1 | none | none | -1, |
| 585 | ENSLAFT00000038039.1 | chrM | + | 2665 | 2740 | 2740 | 2740 | 1 | 2665, | 2740, | 0 | ENSLAFG00000033273.1 | none | none | -1, |
| 585 | ENSLAFT00000038040.1 | chrM | + | 2740 | 3697 | 2740 | 3697 | 1 | 2740, | 3697, | 0 | ENSLAFG00000033274.1 | cmpl | cmpl | 0, |
| 585 | ENSLAFT00000038041.1 | chrM | - | 3695 | 3764 | 3764 | 3764 | 1 | 3695, | 3764, | 0 | ENSLAFG00000033275.1 | none | none | -1, |
| 585 | ENSLAFT00000038042.1 | chrM | + | 3761 | 3833 | 3833 | 3833 | 1 | 3761, | 3833, | 0 | ENSLAFG00000033276.1 | none | none | -1, |
| 585 | ENSLAFT00000038043.1 | chrM | + | 3835 | 3905 | 3905 | 3905 | 1 | 3835, | 3905, | 0 | ENSLAFG00000033277.1 | none | none | -1, |
| 585 | ENSLAFT00000038044.1 | chrM | + | 3905 | 4949 | 3905 | 4949 | 1 | 3905, | 4949, | 0 | ENSLAFG00000033278.1 | cmpl | cmpl | 0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server