Schema for estOrientInfo
  Database: macEug2    Primary Table: estOrientInfo    Row Count: 417,423   Data last updated: 2017-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom ABQO010000537varchar(255) values Reference sequence chromosome or scaffold
chromStart 93int(10) unsigned range Start position in chromosome
chromEnd 220int(10) unsigned range End position in chromosome
name EX200705varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      macEug2.all_est.qName (via estOrientInfo.name)
      macEug2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585ABQO01000053793220EX20070500000
585ABQO01000062231973773EX20722610000
585ABQO01000142410331195EX209958020000
585ABQO010002873156807EX19965700000
585ABQO010002873494807EX20205705000
585ABQO010005220245754EX203258013000
585ABQO01000800822342336EX206828013000
585ABQO010009479132294EX209958020000
585ABQO01000962219232013EX19874700100
585ABQO01000962219232013EX19884400000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.