Schema for all_mrna
  Database: melGal1    Primary Table: all_mrna    Row Count: 345   Data last updated: 2017-01-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1116int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 434int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AM167974varchar(255) values Query sequence name
qSize 1240int(10) unsigned range Query sequence size
qStart 94int(10) unsigned range Alignment start position in query
qEnd 1215int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 204065131int(10) unsigned range Target sequence size
tStart 173784int(10) unsigned range Alignment start position in target
tEnd 175339int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 502,155,266,198,longblob   Size of each block
qStarts 25,527,682,948,longblob   Start of each block in query.
tStarts 173784,174369,174715,175141,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      melGal1.all_est.qName (via all_mrna.qName)
      melGal1.mrnaOrientInfo.name (via all_mrna.qName)
      melGal1.xenoMrna.qName (via all_mrna.qName)
      melGal1.xenoRefGene.name (via all_mrna.qName)
      melGal1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5861116500003434-AM1679741240941215chr12040651311737841753394502,155,266,198,25,527,682,948,173784,174369,174715,175141,
6472259400117819046+KR528577228002280chr1204065131822009382414029247,104,108,155,91,100,213,841,404,0,247,351,459,614,705,805,1018,1876,8220093,8223381,8226902,8227847,8228824,8232243,8233963,8239582,8240998,
743480825003689196+KR528575484814840chr1204065131207112352072526412202,181,131,281,151,186,157,1944,601,595,376,28,1,203,384,515,796,947,1133,1290,3237,3840,4435,4812,20711235,20712256,20716068,20716601,20717196,20720242,20720942,20721719,20723663,20724264,20724860,20725236,
865255000002982-JQ2804712600255chr12040651313678092736782164326,180,49,5,31,211,36780927,36781595,36782115,
87681220000512089+DQ07497682410824chr120406513138251446382643496153,184,101,68,197,111,10,163,347,448,516,713,38251446,38253157,38253447,38256942,38262405,38264238,
9043612001122+GU2230687290364chr120406513141829562418299274237,8,23,95,0,237,245,269,41829562,41829800,41829809,41829832,
9172443000011596+KC5941012490247chr120406513143639849436416922113,134,0,113,43639849,43641558,
9813921010032584-GQ2813263962396chr120406513151972295519752734123,92,80,99,0,123,215,295,51972295,51973225,51974341,51975174,
10013771000032060-EF0507943780378chr12040651315460297554605413441,96,102,139,0,41,137,239,54602975,54603998,54604397,54605274,
1004277155310022+AF540412675312658chr120406513154960970549613183299,27,20,312,611,638,54960970,54961270,54961298,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.