Schema for estOrientInfo
  Database: melGal5    Primary Table: estOrientInfo    Row Count: 19,613   Data last updated: 2017-01-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1019smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 56922591int(10) unsigned range Start position in chromosome
chromEnd 56922940int(10) unsigned range End position in chromosome
name AF062413varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      melGal5.all_est.qName (via estOrientInfo.name)
      melGal5.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1019chr15692259156922940AF06241300000
1536chr1124659564124659899AF06241601000
618chr1243576714357913AF06241501000
730chr141906739219067763AF06241400000
605chr2526694002669650AF06240800000
596chr414958421496099AF06240700000
802chr42851487028515140AF06241100000
1053chr46145556261455697AF06241000200
921chr54407273044072932AF06241201100
728chr71886492818864991AF06241200100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.