Schema for xenoRefFlat
  Database: micMur2    Primary Table: xenoRefFlat    Row Count: 347,000   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName TVP23Bvarchar(255) values Name of gene as it appears in genome browser.
name NM_001133963varchar(255) values Name of gene
chrom KQ053948v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 3130531int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3132023int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 3131391int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 3132009int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 8int(10) unsigned range Number of exons
exonStarts 3130531,3130763,3130830,313...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3130681,3130791,3130885,313...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      micMur2.xenoRefGene.name (via xenoRefFlat.name)
      micMur2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
TVP23BNM_001133963KQ053948v1-313053131320233131391313200983130531,3130763,3130830,3130918,3131053,3131174,3131194,3131381,3130681,3130791,3130885,3130991,3131133,3131184,3131368,3132023,
ITGA10NM_001303041KQ053256v1-5180649519483551822535194660305180649,5181143,5181231,5181415,5181956,5182608,5183517,5183772,5184127,5184411,5184438,5184893,5185128,5185361,5185626,5185914, ...5181131,5181211,5181402,5181920,5182319,5182724,5183637,5183853,5184241,5184438,5184490,5184983,5185205,5185460,5185762,5185997, ...
RPL17NM_001199344KQ053916v1+244018524429512440199244295162440185,2440329,2440978,2441351,2442328,2442906,2440239,2440366,2441117,2441450,2442520,2442951,
SNX2NM_003100KQ055247v1-664656266484276647030664840896646562,6647091,6647134,6647233,6647652,6647750,6647898,6648157,6648213,6647091,6647133,6647233,6647652,6647746,6647898,6648150,6648178,6648427,
Myo9bNM_001142323KQ058441v1-11711218960311773818960347117112,117427,117967,118886,119864,121669,122137,122469,122687,123108,123438,124294,124628,124961,125248,126251,126403,126725,12 ...117183,117743,118095,118924,119988,121800,122244,122598,122877,123111,123512,124406,124670,125135,125344,126383,126436,126801,12 ...
HIST1H2BANM_001193797KQ055662v1-116743411696841167434116968421167434,1169660,1167485,1169684,
P4HA2NM_001142599KQ053278v1-82158984676182404784675518821589,823431,823582,823964,824003,826018,826505,829697,830345,833868,834215,838184,838979,839538,841411,845048,845916,846673,821638,823572,823917,823991,824118,826115,826574,829763,830399,833968,834286,838361,839177,839774,841549,845200,846013,846761,
OGG1NR_148930KQ058605v1+83666084387884387884387810836660,838958,841167,842955,843246,843356,843484,843536,843690,843827,836777,839138,841349,843106,843317,843377,843526,843652,843771,843878,
IVDNR_148925KQ053631v1+5926433595804759580475958047225926433,5926518,5926783,5926891,5927759,5928071,5934492,5935464,5935900,5937327,5938995,5939546,5940509,5940719,5946334,5946947, ...5926509,5926647,5926825,5926921,5927866,5928123,5934658,5935562,5936037,5937424,5939089,5939628,5940614,5940794,5946340,5946971, ...
sptl-3NM_001269618KQ054954v1+318197632469323181976324693243181976,3184086,3211650,3246842,3182087,3184179,3211779,3246932,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.