Schema for ceBlastTab
  Database: mm39    Primary Table: ceBlastTab    Row Count: 4,409   Data last updated: 2024-08-15
Format description: Blast alignments of C. elegans genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query ENSMUST00000047357.10varchar(255) values Name of sequence in this assembly (query)
target F09G2.4varchar(255) values Name of sequence in other assembly (target)
identity 54.72float range Percent identity
aliLength 371int(10) unsigned range Length of alignment
mismatch 166int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 370int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 370int(10) unsigned range End in target (non-inclusive)
eValue 1e-121double range Expectation value
bitScore 434double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via ceBlastTab.query)
      knownGeneV39.ceBlastTab.query (via ceBlastTab.query)
      knownGeneV39.dmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.drBlastTab.query (via ceBlastTab.query)
      knownGeneV39.foldUtr3.name (via ceBlastTab.query)
      knownGeneV39.foldUtr5.name (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via ceBlastTab.query)
      knownGeneV39.kgAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgColor.kgID (via ceBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via ceBlastTab.query)
      knownGeneV39.kgXref.kgID (via ceBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.query (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.target (via ceBlastTab.query)
      knownGeneV39.knownCanonical.protein (via ceBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via ceBlastTab.query)
      knownGeneV39.knownCds.name (via ceBlastTab.query)
      knownGeneV39.knownGene.name (via ceBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via ceBlastTab.query)
      knownGeneV39.knownGenePep.name (via ceBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via ceBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via ceBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via ceBlastTab.query)
      knownGeneV39.knownToHprd.name (via ceBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via ceBlastTab.query)
      knownGeneV39.knownToMrna.name (via ceBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via ceBlastTab.query)
      knownGeneV39.knownToMupit.name (via ceBlastTab.query)
      knownGeneV39.knownToPfam.name (via ceBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via ceBlastTab.query)
      knownGeneV39.knownToSuper.gene (via ceBlastTab.query)
      knownGeneV39.knownToTag.name (via ceBlastTab.query)
      knownGeneV39.knownToU133.name (via ceBlastTab.query)
      knownGeneV39.knownToU95.name (via ceBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via ceBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via ceBlastTab.query)
      knownGeneV39.mmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.rnBlastTab.query (via ceBlastTab.query)
      knownGeneV39.scBlastTab.query (via ceBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via ceBlastTab.query)
      mm39.bioCycPathway.kgID (via ceBlastTab.query)
      mm39.dmBlastTab.query (via ceBlastTab.query)
      mm39.drBlastTab.query (via ceBlastTab.query)
      mm39.foldUtr3.name (via ceBlastTab.query)
      mm39.foldUtr5.name (via ceBlastTab.query)
      mm39.hgBlastTab.query (via ceBlastTab.query)
      mm39.kgAlias.kgID (via ceBlastTab.query)
      mm39.kgColor.kgID (via ceBlastTab.query)
      mm39.kgProtAlias.kgID (via ceBlastTab.query)
      mm39.kgSpAlias.kgID (via ceBlastTab.query)
      mm39.kgTargetAli.qName (via ceBlastTab.query)
      mm39.kgXref.kgID (via ceBlastTab.query)
      mm39.knownAttrs.kgID (via ceBlastTab.query)
      mm39.knownBlastTab.query (via ceBlastTab.query)
      mm39.knownBlastTab.target (via ceBlastTab.query)
      mm39.knownCanonical.transcript (via ceBlastTab.query)
      mm39.knownCds.name (via ceBlastTab.query)
      mm39.knownGene.name (via ceBlastTab.query)
      mm39.knownGeneMrna.name (via ceBlastTab.query)
      mm39.knownIsoforms.transcript (via ceBlastTab.query)
      mm39.knownToEnsembl.name (via ceBlastTab.query)
      mm39.knownToLocusLink.name (via ceBlastTab.query)
      mm39.knownToMrna.name (via ceBlastTab.query)
      mm39.knownToMrnaSingle.name (via ceBlastTab.query)
      mm39.knownToMupit.name (via ceBlastTab.query)
      mm39.knownToNextProt.name (via ceBlastTab.query)
      mm39.knownToPfam.name (via ceBlastTab.query)
      mm39.knownToRefSeq.name (via ceBlastTab.query)
      mm39.knownToSuper.gene (via ceBlastTab.query)
      mm39.knownToTag.name (via ceBlastTab.query)
      mm39.knownToVisiGene.name (via ceBlastTab.query)
      mm39.knownToWikipedia.name (via ceBlastTab.query)
      mm39.rnBlastTab.query (via ceBlastTab.query)
      mm39.scBlastTab.query (via ceBlastTab.query)
      mm39.ucscScop.ucscId (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENSMUST00000047357.10F09G2.454.723711662037003701e-121434
ENSMUST00000190686.7Y57A10A.1942.76152814015101473e-1892.4
ENSMUST00000037023.9B0412.473.21561500560563e-1989.4
ENSMUST00000027131.6Y55F3BL.2b43.711678726648271302943e-37154
ENSMUST00000073076.12Y48G8AL.11a52.065822752118696866682e-168589
ENSMUST00000179802.2F28H1.4a29.681551042431951122650.000000351.6
ENSMUST00000205179.3C47B2.7b31.765292721812525184742e-55213
ENSMUST00000170909.2T23G7.152.652261003115337722951e-49193
ENSMUST00000096261.5Y54E10BR.676.741724000172231951e-72268
ENSMUST00000165512.4F33D11.468.33601902382981071672e-1993.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.