Schema for xenoRefFlat
  Database: monDom1    Primary Table: xenoRefFlat    Row Count: 482,082   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName matn1.Lvarchar(255) values Name of gene as it appears in genome browser.
name NM_001086332varchar(255) values Name of gene
chrom scaffold_13243varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 1162150int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 1189065int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 1162150int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 1189065int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 9int(10) unsigned range Number of exons
exonStarts 1162150,1174218,1177285,117...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 1162489,1174440,1177400,117...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      monDom1.xenoMrna.qName (via xenoRefFlat.name)
      monDom1.xenoRefGene.name (via xenoRefFlat.name)
      monDom1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
matn1.LNM_001086332scaffold_13243+116215011890651162150118906591162150,1174218,1177285,1177517,1179227,1186168,1187882,1188064,1189029,1162489,1174440,1177400,1177519,1179635,1186319,1187961,1188068,1189065,
ARPP21NM_001385574scaffold_15147-217046622110672170466221106782170466,2192927,2200169,2200394,2202844,2203716,2206594,2210992,2170613,2192939,2200265,2200426,2202992,2203825,2206725,2211067,
ACACBNM_001206399scaffold_10050-257135292257135292162571,3021,3823,4432,4961,7886,8613,8767,8816,9413,10187,10374,13274,16032,16140,35184,2676,3172,3987,4594,5132,8096,8724,8771,8922,9510,10271,10484,13413,16128,16167,35292,
krp1NM_001020264scaffold_18546-421350542147374213505421473734213505,4213882,4214704,4213607,4213905,4214737,
ppk15NM_001019259scaffold_1480+2640082643532640082643532264008,264071,264047,264353,
SEPTIN7NM_001011553scaffold_15143+5270178527278852701785271492165270178,5270466,5270648,5270708,5270809,5271000,5271246,5271565,5271666,5271712,5272235,5272264,5272378,5272549,5272603,5272671,5270400,5270648,5270707,5270809,5270999,5271245,5271553,5271653,5271701,5271867,5272249,5272327,5272538,5272592,5272629,5272788,
Opa1NM_001199177scaffold_13463+3354609341041133546093410411293354609,3356256,3364177,3364879,3375921,3377428,3378859,3380578,3381687,3381951,3382164,3382319,3383071,3384895,3385048,3386671, ...3354864,3356352,3364234,3364914,3375975,3377533,3378946,3380692,3381768,3382026,3382236,3382419,3383202,3384968,3385121,3386787, ...
FTSH11NM_124696scaffold_13202-224430322462292244303224622932244303,2244384,2246088,2244336,2244459,2246229,
Gdf9NM_008110scaffold_19167-567157556725155671578567251535671575,5672201,5672437,5672010,5672312,5672515,
Gdf5NM_008109scaffold_15037+429286242961414293193429612954292862,4293113,4293603,4295260,4295394,4293020,4293424,4293812,4295374,4296141,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.