Schema for all_mrna
  Database: monDom5    Primary Table: all_mrna    Row Count: 1,714   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 850smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 248int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 855int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName GU048816varchar(255) values Query sequence name
qSize 250int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 250int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 748055161int(10) unsigned range Target sequence size
tStart 34798524int(10) unsigned range Alignment start position in target
tEnd 34799629int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 66,184,longblob   Size of each block
qStarts 0,66,longblob   Start of each block in query.
tStarts 34798524,34799445,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      monDom5.all_est.qName (via all_mrna.qName)
      monDom5.mrnaOrientInfo.name (via all_mrna.qName)
      monDom5.refGene.name (via all_mrna.qName)
      monDom5.refSeqAli.qName (via all_mrna.qName)
      monDom5.xenoMrna.qName (via all_mrna.qName)
      monDom5.xenoRefGene.name (via all_mrna.qName)
      monDom5.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
850248200001855+GU0488162500250chr17480551613479852434799629266,184,0,66,34798524,34799445,
144180951550001131143-U91571197891978chr1748055161750867897511990112300,164,84,264,109,133,124,72,171,135,175,238,0,300,464,548,812,921,1054,1178,1250,1421,1556,1731,75086789,75087090,75087938,75094834,75099000,75101399,75102809,75103522,75106179,75110035,75112614,75119663,
14273542000023682+GQ2408433560356chr17480551611104308841104349223139,107,110,0,139,246,110430884,110433621,110434812,
14273870000023682+GU9847883870387chr17480551611104308961104349653127,107,153,0,127,234,110430896,110433621,110434812,
15175210000016-GU6470805210521chr17480551611222289551222294822482,39,0,482,122228955,122229443,
18842540000000+EU5876974600254chr17480551611703357761703360301254,0,170335776,
18842580000000+EU5876944740258chr17480551611703357761703360341258,0,170335776,
18842580000000+EU5876954660258chr17480551611703357761703360341258,0,170335776,
18842580000000+EU5876984690258chr17480551611703357761703360341258,0,170335776,
18842590000000+EU5876964680259chr17480551611703357761703360351259,0,170335776,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.