Schema for mrnaOrientInfo
  Database: musFur1    Primary Table: mrnaOrientInfo    Row Count: 118,141   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AEYP01108159varchar(255) values Reference sequence chromosome or scaffold
chromStart 14476int(10) unsigned range Start position in chromosome
chromEnd 17364int(10) unsigned range End position in chromosome
name JR782665varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      musFur1.all_mrna.qName (via mrnaOrientInfo.name)
      musFur1.refFlat.name (via mrnaOrientInfo.name)
      musFur1.refGene.name (via mrnaOrientInfo.name)
      musFur1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AEYP011081591447617364JR78266550000
585AEYP011081591476515588EZ50164410000
585AEYP011081591476816820JP01286220000
585AEYP011081591556017185EZ49329320000
585AEYP011081591926522019JR78102430000
585AEYP011081591934221057JP01286120000
585AEYP011081592028320486EZ50016500000
585AEYP011081592039322651JR79246920000
585AEYP011081592040722629JR78431820000
585AEYP011085261523915754JR78740810000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.