Schema for xenoRefFlat
  Database: myoLuc2    Primary Table: xenoRefFlat    Row Count: 437,480   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName LOC100008880varchar(255) values Name of gene as it appears in genome browser.
name NM_001082139varchar(255) values Name of gene
chrom AAPE02055386varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 8354int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 11424int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 11369int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 11422int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 8354,11369,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 8402,11424,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      myoLuc2.xenoMrna.qName (via xenoRefFlat.name)
      myoLuc2.xenoRefGene.name (via xenoRefFlat.name)
      myoLuc2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
LOC100008880NM_001082139AAPE02055386-835411424113691142228354,11369,8402,11424,
Olfr781NM_146728GL430117+7947538920627947538920622794753,892022,795635,892062,
Olfr781NM_146728GL430117+8119749151898119749151893811974,891152,914546,811997,891420,915189,
LOC100008880NM_001082139AAPE02055386-39700775447748977542239700,77489,39748,77544,
LOC100008792NM_001082092AAPE02055386-3972210964375786109643339722,75786,109595,39750,75843,109643,
zgc:162171NM_001082848GL429873+176236617846491762366178464921762366,1784458,1762550,1784649,
LOC100009480NM_001082723AAPE02055386-95837964809583796480295837,96423,95876,96480,
Gm16853NR_045742GL430486+1492681494321494321494322149268,149396,149384,149432,
RGPD6NM_001384364GL429788-7360828736994573627327369945117360828,7361061,7361196,7361743,7361954,7362193,7362220,7362373,7362595,7367525,7369804,7360968,7361170,7361232,7361896,7362083,7362209,7362322,7362439,7362767,7367727,7369945,
Nlgn1NM_001357095GL429767+51065619515600255156002551560025351065619,51266477,51559989,51065643,51266501,51560025,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.