Schema for xenoRefSeqAli
  Database: nomLeu1    Primary Table: xenoRefSeqAli    Row Count: 350,149   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 592smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2673int(10) unsigned range Number of bases that match that aren't repeats
misMatches 98int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 7int(10) unsigned range Number of inserts in query
qBaseInsert 554int(10) unsigned range Number of bases inserted in query
tNumInsert 15int(10) unsigned range Number of inserts in target
tBaseInsert 44691int(10) unsigned range Number of bases inserted in target
strand ++char(2) values + or - for strand. First character query, second target (optional)
qName NR_136211varchar(255) values Query sequence name
qSize 3534int(10) unsigned range Query sequence size
qStart 11int(10) unsigned range Alignment start position in query
qEnd 3336int(10) unsigned range Alignment end position in query
tName GL397492varchar(255) values Target sequence name
tSize 1399117int(10) unsigned range Target sequence size
tStart 997574int(10) unsigned range Alignment start position in target
tEnd 1045036int(10) unsigned range Alignment end position in target
blockCount 18int(10) unsigned range Number of blocks in alignment
blockSizes 48,32,20,97,89,81,42,69,71,...longblob   Size of each block
qStarts 11,59,91,137,234,323,447,48...longblob   Start of each block in query.
tStarts 997574,997625,997671,101471...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      nomLeu1.all_mrna.qName (via xenoRefSeqAli.qName)
      nomLeu1.xenoMrna.qName (via xenoRefSeqAli.qName)
      nomLeu1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      nomLeu1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5922673980075541544691++NR_1362113534113336GL397492139911799757410450361848,32,20,97,89,81,42,69,71,177,105,398,225,410,99,165,227,416,11,59,91,137,234,323,447,489,558,629,806,911,1483,2009,2426,2526,2691,2920,997574,997625,997671,1014714,1021150,1030310,1030498,1030541,1033666,1039577,1041394,1042600,1043176,1043698,1044128,1044227,104 ...
585323770000261106++NM_001093588242815741974ADFV0113442512603833092945983106,183,111,1574,1680,1863,33092,79263,94487,
585380230000261106++NM_001192999268618742277ADFV0113442512603833093946023105,183,115,1874,1979,2162,33093,79263,94487,
61910975300110253216+-NM_00115954616243531605GL3972724171252345436094547975662,291,627,108,38,24,353,415,706,1333,1441,1581,37164548,37165763,37167604,37168553,37168665,37168890,
58510081420041762186++NM_0012435561439871413ADFV0113442512603873826751625177,864,21,45,43,87,266,1132,1159,1370,73826,74003,74867,74891,75119,
5859411350051893208++NM_001046198130041269ADFV011344251260387387775161633,82,864,21,13,63,4,39,123,989,1138,1206,73877,73921,74003,74867,75031,75098,
58593513100555370++NM_00753113601211242ADFV011344251260387391575051688,874,14,42,24,24,121,211,1102,1117,1175,1218,73915,74003,74896,74910,74976,75027,
585597219000000++NM_0011414041465129945ADFV0113442512603873985748011816,129,73985,
585577233000000++NM_0010026811431119929ADFV0113442512603873991748011810,119,73991,
585612207000000++NM_0010165511122101920ADFV0113442512603874003748221819,101,74003,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.