Schema for mrnaOrientInfo
  Database: ochPri2    Primary Table: mrnaOrientInfo    Row Count: 6   Data last updated: 2019-02-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_2593varchar(255) values Reference sequence chromosome or scaffold
chromStart 31992int(10) unsigned range Start position in chromosome
chromEnd 32751int(10) unsigned range End position in chromosome
name EU555402varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      ochPri2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_25933199232751EU55540200000
585scaffold_66186843472337KJ93951840000
587scaffold_1225322970324058KT21605721000
589scaffold_190638605652070KT21606630000
585scaffold_5904211245664KT21606040000
590scaffold_84705092707655MK30515620000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.