Schema for mrnaOrientInfo
  Database: ochPri3    Primary Table: mrnaOrientInfo    Row Count: 6   Data last updated: 2019-02-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 610smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH802122varchar(255) values Reference sequence chromosome or scaffold
chromStart 3301950int(10) unsigned range Start position in chromosome
chromEnd 3302709int(10) unsigned range End position in chromosome
name EU555402varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      ochPri3.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
610JH80212233019503302709EU55540200000
823JH8020733130935331313171KJ93951840000
902JH8020644162165241625157KT21606040000
82JH80209299521319965676KT21606650000
612JH80214036524573653536KT21605721000
585JH8021255373856298MK30515620000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.