Schema for xenoRefFlat
  Database: ochPri3    Primary Table: xenoRefFlat    Row Count: 313,971   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName fam122bvarchar(255) values Name of gene as it appears in genome browser.
name NM_001003466varchar(255) values Name of gene
chrom JH802089varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 15929303int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 15935387int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 15929303int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 15935387int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 15929303,15934467,15934853,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 15929354,15934545,15934856,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      ochPri3.xenoRefGene.name (via xenoRefFlat.name)
      ochPri3.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
fam122bNM_001003466JH802089-15929303159353871592930315935387615929303,15934467,15934853,15934858,15935202,15935342,15929354,15934545,15934856,15934924,15935259,15935387,
Keap1NM_001110307JH802094+53777953922953778653922918537779,537880,537919,538004,538057,538247,538283,538324,538497,538662,538861,538877,539038,539085,539104,539114,539152,539190,537815,537916,537997,538052,538229,538283,538322,538405,538658,538845,538871,538928,539068,539103,539108,539121,539188,539229,
KIF27NM_001354071JH802070+425027524258886142510483425865892242502752,42510300,42520312,42533416,42541631,42542258,42544386,42546456,42548763,42559735,42573107,42575923,42579399,42586151,42 ...42503141,42510501,42520456,42533625,42541795,42542378,42544477,42546655,42548972,42559914,42573314,42576122,42579563,42586328,42 ...
CdiptosNM_001362232JH802086-16624655166255581662465516625558316624655,16624834,16625425,16624713,16624868,16625558,
POLR1HNM_001114945JH802177-6401726420046401726420044640172,641372,641663,641901,640196,641476,641764,642004,
Rad51ap1NM_009013JH802143+162405216329931624052163299341624052,1626804,1632248,1632859,1624085,1626906,1632298,1632993,
Ppp3caNM_008913JH802128+8156107844381581567898441391298156107,8156246,8156385,8156440,8156612,8156708,8296785,8376775,8386292,8387381,8392646,8400027,8401607,8412206,8414312,8431764, ...8156153,8156360,8156415,8156493,8156687,8156847,8296986,8376900,8386404,8387527,8392786,8400105,8401702,8412332,8414387,8431849, ...
BroxNR_151660JH802064-284939772850970828509708285097081228493977,28495221,28496634,28497092,28497106,28498018,28500266,28500995,28502305,28504616,28505769,28509603,28494062,28495386,28496779,28497097,28497186,28498091,28500353,28501101,28502378,28504711,28505866,28509708,
CHRDL1NM_001143983JH802101-138098281394090513812100139373011513809828,13810171,13810737,13811151,13811800,13815123,13817292,13824930,13828591,13836118,13912086,13916049,13937204,13937257,13 ...13810159,13810291,13810788,13811210,13812230,13815214,13817460,13825140,13828760,13836186,13912180,13916162,13937254,13937316,13 ...
DAB2IPNM_001144082JH802102+80206581805080206581804413802065,803921,804298,805782,805929,806196,806533,806854,808430,808806,813547,814343,817996,802173,804068,804397,805911,806136,806406,806676,806994,808680,808996,813700,814370,818050,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.