Schema for estOrientInfo
  Database: oreNil2    Primary Table: estOrientInfo    Row Count: 129,730   Data last updated: 2016-05-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AERX01074241-1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2341int(10) unsigned range Start position in chromosome
chromEnd 2514int(10) unsigned range End position in chromosome
name AI001486varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      oreNil2.all_est.qName (via estOrientInfo.name)
      oreNil2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AERX01074241-123412514AI00148600000
585AERX01074242-123412514AI00148600000
594GL831181-112558811255995AI00165400000
591GL831184-1831451831759AI00158400000
591GL831184-1832380832575AI00158500000
603GL831184-124758732476024AI00170701000
603GL831184-124763532476428AI00170600131534
601GL831204-122043462204463AI0017090382032
601GL831204-122048742205036AI00170800000
605GL831204-126361492636520AI00154401010280

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.